RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	CCDC27	Q2M243	656 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	HABP4	Q5JVS0	413 aa	Known RBP	3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	EFCAB2	Q5VUJ9	269 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858		Q6ZRM9	215 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	EP400NL	Q6ZTU2	488 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	PROKR1	Q8TCW9	393 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	RABGGTA	Q92696	567 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	WNK4	Q96J92	1243 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	GPR87	Q9BY21	358 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	AGO3	Q9H9G7	860 aa	Known RBP	3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	RIC8B	Q9NVN3	520 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858		Q9UFV3	132 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	FZD1	Q9UP38	647 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	COX11	Q9Y6N1	276 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	DLG5	Q8TDM6	1919 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	NOS1	P29475	1434 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	NPAT	Q14207	1427 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	NRK	Q7Z2Y5	1582 aa		3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	SPAG9	O60271	1321 aa	Known RBP	3.16	□□□□□ -1.9
SPG11-223	ENST00000560858	AKAP12	Q02952	1782 aa		3.15	□□□□□ -1.9
SPG11-223	ENST00000560858	NSD2	O96028	1365 aa		3.15	□□□□□ -1.9
SPG11-223	ENST00000560858	TUBGCP6	Q96RT7	1819 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	FAM47E-STBD1	D6RA91	191 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	AGRP	O00253	132 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	KIAA0355	O15063	1070 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	FAM20B	O75063	409 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	ITGB1	P05556	798 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	PTPN1	P18031	435 aa	Known RBP	3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	PTGS1	P23219	599 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	TAP1	Q03518	808 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	SLFN5	Q08AF3	891 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	WDR43	Q15061	677 aa	Known RBP eCLIP	3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	STIL	Q15468	1287 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	RABL3	Q5HYI8	236 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	CC2D1B	Q5T0F9	858 aa	Known RBP	3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	LBX2	Q6XYB7	198 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	USP53	Q70EK8	1073 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	THAP3	Q8WTV1	239 aa	Predicted RBP	3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	BTBD2	Q9BX70	525 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	CYP4F11	Q9HBI6	524 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	KNSTRN	Q9Y448	316 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	ZFYVE9	O95405	1425 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	ARHGAP31	Q2M1Z3	1444 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	ASXL2	Q76L83	1435 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	NSD3	Q9BZ95	1437 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	ITSN1	Q15811	1721 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	CGNL1	Q0VF96	1302 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	NEO1	Q92859	1461 aa		3.15	□□□□□ -1.91
SPG11-223	ENST00000560858	TOPAZ1	Q8N9V7	1692 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	LRRC7	Q96NW7	1537 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	DLC1	Q96QB1	1528 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	NALCN	Q8IZF0	1738 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	GOLGA6L6	A8MZA4	724 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	PLIN1	O60240	522 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	SUSD5	O60279	629 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	C20orf194	Q5TEA3	1177 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	KCNV1	Q6PIU1	500 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	C6orf15	Q6UXA7	325 aa	Predicted RBP	3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	RHOU	Q7L0Q8	258 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	FAM178B	Q8IXR5	827 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	FAM169B	Q8N8A8	192 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	DCAF4	Q8WV16	495 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	NELL1	Q92832	810 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	LPP	Q93052	612 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	ANAPC16	Q96DE5	110 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	SEC16B	Q96JE7	1060 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	ZFYVE21	Q9BQ24	234 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	CD244	Q9BZW8	370 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	STRIP2	Q9ULQ0	834 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	NRXN3	Q9Y4C0	1643 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	PTPRM	P28827	1452 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	USP19	O94966	1318 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	MAPK8IP3	Q9UPT6	1336 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	C3	P01024	1663 aa		3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	RIMS1	Q86UR5	1692 aa	Known RBP	3.14	□□□□□ -1.91
SPG11-223	ENST00000560858	ANKRD36B	Q8N2N9	1353 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	ABCC11	Q96J66	1382 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	FMN2	Q9NZ56	1722 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	3.13	□□□□□ -1.91
SPG11-223	ENST00000560858		E9PSI1	815 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	SOD2	P04179	222 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	ECE1	P42892	770 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	CD83	Q01151	205 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	ELAVL1	Q15717	326 aa	Known RBP	3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	HECTD2	Q5U5R9	776 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	GRAMD4	Q6IC98	578 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	RD3	Q7Z3Z2	195 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	NPM2	Q86SE8	214 aa	Known RBP	3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	IFNL3	Q8IZI9	196 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	PUS7	Q96PZ0	661 aa	Known RBP	3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	IER2	Q9BTL4	223 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	MLST8	Q9BVC4	326 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	MAP2	P11137	1827 aa	Known RBP	3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	CD163L1	Q9NR16	1453 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	ADGRF5	Q8IZF2	1346 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	RGPD1	P0DJD0	1748 aa		3.13	□□□□□ -1.91
SPG11-223	ENST00000560858	PPIP5K1	Q6PFW1	1433 aa		3.12	□□□□□ -1.91
SPG11-223	ENST00000560858	NCOA3	Q9Y6Q9	1424 aa		3.12	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms