RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PPME1Q9Y570 386 aa10.29□□□□□ -0.76
HDDC3-204ENST00000559834 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.28□□□□□ -0.76
HDDC3-204ENST00000559834 EPB41L2O43491 1005 aaKnown RBP10.28□□□□□ -0.76
HDDC3-204ENST00000559834 OFD1O75665 1012 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 STBD1O95210 358 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 ALDH2P05091 517 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 GALTP07902 379 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 RARS2Q5T160 578 aaKnown RBP10.28□□□□□ -0.76
HDDC3-204ENST00000559834 B3GNT9Q6UX72 402 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 KRT25Q7Z3Z0 450 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 SRGAP1Q7Z6B7 1085 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 CABP7Q86V35 215 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 ZDHHC14Q8IZN3 488 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 TDRD5Q8NAT2 981 aaKnown RBP10.28□□□□□ -0.76
HDDC3-204ENST00000559834 DAGLBQ8NCG7 672 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 URGCPQ8TCY9 931 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 SLC7A3Q8WY07 619 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 FAM20AQ96MK3 541 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 NLRP4Q96MN2 994 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 FAM193BQ96PV7 902 aaPredicted RBP10.28□□□□□ -0.76
HDDC3-204ENST00000559834 CEP89Q96ST8 783 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 PHOX2BQ99453 314 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 EMILIN2Q9BXX0 1053 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 ZBP1Q9H171 429 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 POMKQ9H5K3 350 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 NRDE2Q9H7Z3 1164 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 ZSWIM6Q9HCJ5 1215 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 TBC1D13Q9NVG8 400 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 DDX25Q9UHL0 483 aaKnown RBP10.28□□□□□ -0.76
HDDC3-204ENST00000559834 USTQ9Y2C2 406 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 INPP5FQ9Y2H2 1132 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 CYP46A1Q9Y6A2 500 aa10.28□□□□□ -0.76
HDDC3-204ENST00000559834 SPDYE4A6NLX3 237 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 C2CD4DB7Z1M9 353 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 M0R2N6 131 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 ASAP2O43150 1006 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 MARCH6O60337 910 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 TDP2O95551 362 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 P4HBP07237 508 aaKnown RBP10.27□□□□□ -0.77
HDDC3-204ENST00000559834 XBP1P17861 261 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 KLRC2P26717 231 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 QARSP47897 775 aaKnown RBP10.27□□□□□ -0.77
HDDC3-204ENST00000559834 VCPP55072 806 aaKnown RBP10.27□□□□□ -0.77
HDDC3-204ENST00000559834 NCBP1Q09161 790 aaKnown RBP10.27□□□□□ -0.77
HDDC3-204ENST00000559834 LONRF3Q496Y0 759 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 KIAA1841Q6NSI8 718 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 ANO5Q75V66 913 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 OTUD6AQ7L8S5 288 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 CNNM3Q8NE01 707 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 ETNPPLQ8TBG4 499 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 SLC22A17Q8WUG5 538 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 LPPQ93052 612 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 ACSF2Q96CM8 615 aaPredicted RBP10.27□□□□□ -0.77
HDDC3-204ENST00000559834 CEP170P1Q96L14 293 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 MBOAT7Q96N66 472 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 NAP1L4Q99733 375 aaKnown RBP10.27□□□□□ -0.77
HDDC3-204ENST00000559834 SH2D3AQ9BRG2 576 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 GBP3Q9H0R5 595 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 UBN1Q9NPG3 1134 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 CYP26B1Q9NR63 512 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 LIMD1Q9UGP4 676 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 SSX2IPQ9Y2D8 614 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 FAN1Q9Y2M0 1017 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 PCDHB2Q9Y5E7 798 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 ZDBF2Q9HCK1 2354 aa10.27□□□□□ -0.77
HDDC3-204ENST00000559834 MYO10Q9HD67 2058 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 CCDC194A0A1B0GVG4 234 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 TMEM150BA6NC51 233 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 GALR2O43603 387 aaPredicted RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 GAS2O43903 313 aaKnown RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 CDKL5O76039 1030 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 BRD1O95696 1058 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 SRGAP2CP0DJJ0 459 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 GCFC2P16383 781 aaKnown RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 EPCAMP16422 314 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 RFC5P40937 340 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 SLC11A1P49279 550 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 PPP2R5CQ13362 524 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 TOB2Q14106 344 aaPredicted RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 PCBP1Q15365 356 aaKnown RBP eCLIP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 INF2Q27J81 1249 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 LETM2Q2VYF4 491 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 PPP4R3AQ6IN85 833 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 ELMSAN1Q6PJG2 1045 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 OTOP3Q7RTS5 596 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 MRPL10Q7Z7H8 261 aaKnown RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 KSR1Q8IVT5 923 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 C12orf76Q8N812 135 aaPredicted RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 TCP11Q8WWU5 503 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 PRPF31Q8WWY3 499 aaKnown RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 PSPC1Q8WXF1 523 aaKnown RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 AUTS2Q8WXX7 1259 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 TMEM175Q9BSA9 504 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 MFSD1Q9H3U5 465 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 SFXN1Q9H9B4 322 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 RSAD1Q9HA92 442 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 IFT122Q9HBG6 1241 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 MRPL17Q9NRX2 175 aaKnown RBP10.26□□□□□ -0.77
HDDC3-204ENST00000559834 AGPAT5Q9NUQ2 364 aa10.26□□□□□ -0.77
HDDC3-204ENST00000559834 DPP7Q9UHL4 492 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 213.8 ms