RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 MBTD1Q05BQ5 628 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 BTG3Q14201 252 aaPredicted RBP11.83□□□□□ -0.52
LINC00239-201ENST00000556973 TWF2Q6IBS0 349 aaKnown RBP11.83□□□□□ -0.52
LINC00239-201ENST00000556973 ECHDC2Q86YB7 292 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 ZBTB8OSQ8IWT0 167 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 CMTR2Q8IYT2 770 aaKnown RBP11.83□□□□□ -0.52
LINC00239-201ENST00000556973 RASSF8Q8NHQ8 419 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 MYLIPQ8WY64 445 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 ARNTL2Q8WYA1 636 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 EPSTI1Q96J88 318 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 DRC1Q96MC2 740 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 CLIC6Q96NY7 704 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 GAS2L1Q99501 681 aaPredicted RBP11.83□□□□□ -0.52
LINC00239-201ENST00000556973 C2orf40Q9H1Z8 148 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 CERS4Q9HA82 394 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 C17orf75Q9HAS0 396 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 RC3H2Q9HBD1 1191 aaKnown RBP11.83□□□□□ -0.52
LINC00239-201ENST00000556973 PIN4Q9Y237 131 aaKnown RBP11.83□□□□□ -0.52
LINC00239-201ENST00000556973 MYH11P35749 1972 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 ADGRA3Q8IWK6 1321 aa11.83□□□□□ -0.52
LINC00239-201ENST00000556973 LRRIQ4A6NIV6 560 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 HOXA2O43364 376 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 ZNF623O75123 536 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 BRD1O95696 1058 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 SSBP05455 408 aaKnown RBP eCLIP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 IBSPP21815 317 aaPredicted RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 HOXA11P31270 313 aaPredicted RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 TXLNAP40222 546 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 KARSQ15046 597 aaKnown RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 SPECC1Q5M775 1068 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 CDCA2Q69YH5 1023 aaPredicted RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 USP49Q70CQ1 688 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 BSNDQ8WZ55 320 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 CLP1Q92989 425 aaKnown RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 PRIMPOLQ96LW4 560 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 FZD8Q9H461 694 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 POLD4Q9HCU8 107 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 FAM105AQ9NUU6 356 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 PRMT7Q9NVM4 692 aaPredicted RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 DAXXQ9UER7 740 aaPredicted RBP11.82□□□□□ -0.52
LINC00239-201ENST00000556973 RWDD3Q9Y3V2 267 aa11.82□□□□□ -0.52
LINC00239-201ENST00000556973 TSPAN1O60635 241 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 HIP1RO75146 1068 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 RB1P06400 928 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 FOSL2P15408 326 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 PLCG1P19174 1290 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 POU3F3P20264 500 aaPredicted RBP11.81□□□□□ -0.52
LINC00239-201ENST00000556973 RAB27AP51159 221 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 EFNA5P52803 228 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 PEX3P56589 373 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 MAPK6Q16659 721 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 FAM187BQ17R55 369 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 EPC2Q52LR7 807 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 ARSHQ5FYA8 562 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 RRAGBQ5VZM2 374 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 NOTUMQ6P988 496 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 ZNF598Q86UK7 904 aaKnown RBP11.81□□□□□ -0.52
LINC00239-201ENST00000556973 TMEM192Q8IY95 271 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 ABI1Q8IZP0 508 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 CNNM3Q8NE01 707 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 DEPTORQ8TB45 409 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 KCNG4Q8TDN1 519 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 RSPH1Q8WYR4 309 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 RAD54LQ92698 747 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 SYMPKQ92797 1274 aaKnown RBP11.81□□□□□ -0.52
LINC00239-201ENST00000556973 PGBD4Q96DM1 585 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 CCDC51Q96ER9 411 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 NTPCRQ9BSD7 190 aaKnown RBP11.81□□□□□ -0.52
LINC00239-201ENST00000556973 C17orf80Q9BSJ5 609 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 RUSC1Q9BVN2 902 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 BLOC1S4Q9NUP1 217 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 ZDHHC9Q9Y397 364 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 ATP6V1DQ9Y5K8 247 aa11.81□□□□□ -0.52
LINC00239-201ENST00000556973 CDH23Q9H251 3354 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 A0A1B0GUA9 196 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 CCDC169A6NNP5 214 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 C5orf67F2Z3F1 127 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 K7ERI5 159 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 RFXAPO00287 272 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 CUTAO60888 179 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 FGFR1P11362 822 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 ARF4P18085 180 aaPredicted RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 IGFBP4P22692 258 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 BMPR1AP36894 532 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 DNM1Q05193 864 aaKnown RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 MCM6Q14566 821 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 AMHR2Q16671 573 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 FOXD4L6Q3SYB3 417 aaPredicted RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 PAN2Q504Q3 1202 aaKnown RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 UBXN11Q5T124 520 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 FOXD4L3Q6VB84 417 aaPredicted RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 PPP4R3CPQ6ZMV5 832 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 CCDC73Q6ZRK6 1079 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 SPRED2Q7Z698 418 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 MRPL10Q7Z7H8 261 aaKnown RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 DAW1Q8N136 415 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 FBXO22Q8NEZ5 403 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 LARP4BQ92615 738 aaKnown RBP11.8□□□□□ -0.52
LINC00239-201ENST00000556973 CASD1Q96PB1 797 aa11.8□□□□□ -0.52
LINC00239-201ENST00000556973 TMEM117Q9H0C3 514 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms