RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 P2RX5Q93086 422 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 BHMT2Q9H2M3 363 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 CWH43Q9H720 699 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 FAM105AQ9NUU6 356 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 MYO7AQ13402 2215 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 MEIS3P2A8K0S8 358 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 HOXA2O43364 376 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 TSPAN1O60635 241 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 CSPG5O95196 566 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 EOMESO95936 686 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 PDCP20941 246 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 SYT1P21579 422 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 DNAJB1P25685 340 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 TFF2Q03403 129 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 POU5F1BQ06416 359 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 CAMK1Q14012 370 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 LONRF3Q496Y0 759 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 MCPH1Q8NEM0 835 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 BSNDQ8WZ55 320 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 PLAGL2Q9UPG8 496 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 BRWD1Q9NSI6 2320 aa22.76■■□□□ 1.23
VTI1B-205ENST00000555543 VWA3AA6NCI4 1184 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 E9PMD0 336 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 INO80B-WBP1J3KQ70 363 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 CYP11B2P19099 503 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 AMHR2Q16671 573 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 UBXN11Q5T124 520 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 SPOUT1Q5T280 376 aaKnown RBP22.75■■□□□ 1.23
VTI1B-205ENST00000555543 KRT79Q5XKE5 535 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 KCNK18Q7Z418 384 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 COLGALT1Q8NBJ5 622 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 SNX21Q969T3 373 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 NFKBIZQ9BYH8 718 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 STK24Q9Y6E0 443 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 PLXNA4Q9HCM2 1894 aa22.75■■□□□ 1.23
VTI1B-205ENST00000555543 ERLIN2O94905 339 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 RAB27AP51159 221 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 RESTQ13127 1097 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 TIGD5Q53EQ6 642 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 NAALADL2Q58DX5 795 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 TCEAL5Q5H9L2 206 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 ARL6IP4Q66PJ3 421 aaKnown RBP22.74■■□□□ 1.23
VTI1B-205ENST00000555543 ABI1Q8IZP0 508 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 LRRC43Q8N309 656 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 SPPL3Q8TCT6 385 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 ATXN2LQ8WWM7 1075 aaKnown RBP22.74■■□□□ 1.23
VTI1B-205ENST00000555543 LMAN2LQ9H0V9 348 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 POLD4Q9HCU8 107 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 PCDHB2Q9Y5E7 798 aa22.74■■□□□ 1.23
VTI1B-205ENST00000555543 LRRIQ4A6NIV6 560 aa22.73■■□□□ 1.23
VTI1B-205ENST00000555543 B4GALT5O43286 388 aa22.73■■□□□ 1.23
VTI1B-205ENST00000555543 ZNF623O75123 536 aa22.73■■□□□ 1.23
VTI1B-205ENST00000555543 CDCA2Q69YH5 1023 aaPredicted RBP22.73■■□□□ 1.23
VTI1B-205ENST00000555543 CPB2Q96IY4 423 aa22.73■■□□□ 1.23
VTI1B-205ENST00000555543 COL25A1Q9BXS0 654 aaPredicted RBP22.73■■□□□ 1.23
VTI1B-205ENST00000555543 TTC28Q96AY4 2481 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 EYA4O95677 639 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 SKIP12755 728 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 LAG3P18627 525 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 PBX3P40426 434 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 SF3A1Q15459 793 aaKnown RBP22.72■■□□□ 1.23
VTI1B-205ENST00000555543 FAM173BQ6P4H8 233 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 PNMA5Q96PV4 448 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 ASB2Q96Q27 587 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 EIF2AQ9BY44 585 aaKnown RBP22.72■■□□□ 1.23
VTI1B-205ENST00000555543 NSUN3Q9H649 340 aaKnown RBP22.72■■□□□ 1.23
VTI1B-205ENST00000555543 MTMR6Q9Y217 621 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 PCDHB12Q9Y5F1 795 aa22.72■■□□□ 1.23
VTI1B-205ENST00000555543 ARF4P18085 180 aaPredicted RBP22.71■■□□□ 1.23
VTI1B-205ENST00000555543 IRS1P35568 1242 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 MRPS5P82675 430 aaKnown RBP22.71■■□□□ 1.23
VTI1B-205ENST00000555543 GRIN1Q05586 938 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 PCBP1Q15365 356 aaKnown RBP eCLIP22.71■■□□□ 1.23
VTI1B-205ENST00000555543 ZRSR1Q15695 479 aaKnown RBP22.71■■□□□ 1.23
VTI1B-205ENST00000555543 TJAP1Q5JTD0 557 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 HYIQ5T013 277 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 AGMOQ6ZNB7 445 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 MRPL10Q7Z7H8 261 aaKnown RBP22.71■■□□□ 1.23
VTI1B-205ENST00000555543 POF1BQ8WVV4 589 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 HLA-CQ95604 372 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 RUSC1Q9BVN2 902 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 AAASQ9NRG9 546 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 COG5Q9UP83 839 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 DNM3Q9UQ16 869 aa22.71■■□□□ 1.23
VTI1B-205ENST00000555543 DLL1O00548 723 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 FGF18O76093 207 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 AXLP30530 894 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 KCNQ1P51787 676 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 NOTUMQ6P988 496 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 THNSL1Q8IYQ7 743 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 SMG8Q8ND04 991 aaKnown RBP22.7■■□□□ 1.22
VTI1B-205ENST00000555543 PLIN2Q99541 437 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 INPP5FQ9Y2H2 1132 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 PCDHGC5Q9Y5F6 944 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 CLIC4Q9Y696 253 aa22.7■■□□□ 1.22
VTI1B-205ENST00000555543 OFD1O75665 1012 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 BMP15O95972 392 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 AFF1P51825 1210 aaKnown RBP22.69■■□□□ 1.22
VTI1B-205ENST00000555543 KCNT2Q6UVM3 1135 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 CDR2LQ86X02 465 aaPredicted RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms