RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 AGPAT5Q9NUQ2 364 aa15.74■□□□□ 0.11
SHMT2-217ENST00000555116 KIAA1671Q9BY89 1806 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 LRRIQ4A6NIV6 560 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 CUTAO60888 179 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 HIP1RO75146 1068 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 TAP1Q03518 808 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 MCM6Q14566 821 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 ARSHQ5FYA8 562 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 CDCA2Q69YH5 1023 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-217ENST00000555116 SLC28A3Q9HAS3 691 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 MTMR10Q9NXD2 777 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 CCDC39Q9UFE4 941 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 CHD9Q3L8U1 2897 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 RALGAPA2Q2PPJ7 1873 aa15.73■□□□□ 0.11
SHMT2-217ENST00000555116 A0A087X0B3 334 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 DGKIO75912 1065 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 STAG3L1P0CL83 205 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 HOXA11P31270 313 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-217ENST00000555116 TXLNAP40222 546 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 NAMPTP43490 491 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 PPP2R5AQ15172 486 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 PCBP1Q15365 356 aaKnown RBP eCLIP15.72■□□□□ 0.11
SHMT2-217ENST00000555116 AMHR2Q16671 573 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 NAALADL2Q58DX5 795 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 PPP2R2DQ66LE6 453 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 SHC4Q6S5L8 630 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 ZNF689Q96CS4 500 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-217ENST00000555116 FAM161BQ96MY7 647 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 TIPINQ9BVW5 301 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 KCND2Q9NZV8 630 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 PCDHA7Q9UN72 937 aa15.72■□□□□ 0.11
SHMT2-217ENST00000555116 PIN4Q9Y237 131 aaKnown RBP15.72■□□□□ 0.11
SHMT2-217ENST00000555116 NPHP3-ACAD11A0A0J9YXS1 232 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 INO80B-WBP1J3KQ70 363 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 TSPAN1O60635 241 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 NUCB2P80303 420 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 RRAGBQ5VZM2 374 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 SPRED2Q7Z698 418 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 GPBP1Q86WP2 473 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 ECHDC2Q86YB7 292 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 LARP4BQ92615 738 aaKnown RBP15.71■□□□□ 0.11
SHMT2-217ENST00000555116 YME1L1Q96TA2 773 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 TRAIPQ9BWF2 469 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 ELAC1Q9H777 363 aaKnown RBP15.71■□□□□ 0.11
SHMT2-217ENST00000555116 DACT1Q9NYF0 836 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 STK17AQ9UEE5 414 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 PCDHB7Q9Y5E2 793 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 ADGRA3Q8IWK6 1321 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 A0A0U1RQF3 1178 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 LINC01553A4QN01 128 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 KRT85P78386 507 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 RAD51AP2Q09MP3 1159 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 DHX8Q14562 1220 aaKnown RBP15.71■□□□□ 0.11
SHMT2-217ENST00000555116 GRIN2CQ14957 1233 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 LEO1Q8WVC0 666 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-217ENST00000555116 IFT74Q96LB3 600 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 DRC1Q96MC2 740 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 GUCD1Q96NT3 240 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 CCDC113Q9H0I3 377 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 FZD8Q9H461 694 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 TMEM161AQ9NX61 479 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 LRFN2Q9ULH4 789 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 ATP6V1DQ9Y5K8 247 aa15.71■□□□□ 0.11
SHMT2-217ENST00000555116 ERLIN2O94905 339 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 ATF7P17544 494 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-217ENST00000555116 IBSPP21815 317 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-217ENST00000555116 ME1P48163 572 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 GATMP50440 423 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 FAM187BQ17R55 369 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 UBXN11Q5T124 520 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 TWF2Q6IBS0 349 aaKnown RBP15.7■□□□□ 0.1
SHMT2-217ENST00000555116 PPP4R3CPQ6ZMV5 832 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 ZNF598Q86UK7 904 aaKnown RBP15.7■□□□□ 0.1
SHMT2-217ENST00000555116 ZBTB8OSQ8IWT0 167 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 DEPTORQ8TB45 409 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 KIFC3Q9BVG8 833 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 PANK2Q9BZ23 570 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 C2orf40Q9H1Z8 148 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 RNF19AQ9NV58 838 aa15.7■□□□□ 0.1
SHMT2-217ENST00000555116 RNF216Q9NWF9 866 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-217ENST00000555116 SFI1A8K8P3 1242 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 AXLP30530 894 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 NPTX2P47972 431 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 PEX3P56589 373 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 CCDC73Q6ZRK6 1079 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 C17orf75Q9HAS0 396 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 CHD7Q9P2D1 2997 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 COL4A4P53420 1690 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-217ENST00000555116 B4GALT5O43286 388 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 ZNF623O75123 536 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 ARF4P18085 180 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-217ENST00000555116 NCLP19338 710 aaKnown RBP15.69■□□□□ 0.1
SHMT2-217ENST00000555116 ERVK-21P61565 698 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 CACNB1Q02641 598 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-217ENST00000555116 GIT2Q14161 759 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 CMTR2Q8IYT2 770 aaKnown RBP15.69■□□□□ 0.1
SHMT2-217ENST00000555116 CPB2Q96IY4 423 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 SPATA32Q96LK8 384 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 REEP2Q9BRK0 252 aa15.69■□□□□ 0.1
SHMT2-217ENST00000555116 FAM105AQ9NUU6 356 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms