RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 KCTD17Q8N5Z5 321 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 L1RE1Q9UN81 338 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 A0A087X0T9 212 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 SOWAHBA6NEL2 793 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 ANKRD63C9JTQ0 380 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 POTEB2H3BUK9 544 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 ZNF185O15231 689 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 SLC16A3O15427 465 aaKnown RBP12.72□□□□□ -0.37
SHMT2-212ENST00000554467 FAM228BP0C875 321 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 NPTX2P47972 431 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 ASIC2Q16515 512 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 GBP6Q6ZN66 633 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 MMS22LQ6ZRQ5 1243 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 STRA6Q9BX79 667 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 METTL14Q9HCE5 456 aaKnown RBP12.72□□□□□ -0.37
SHMT2-212ENST00000554467 SIX2Q9NPC8 291 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 CDC23Q9UJX2 597 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 PNMA2Q9UL42 364 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 LCTP09848 1927 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 SPATA31C2B4DYI2 1134 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 CYP2C8P10632 490 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 ALDH5A1P51649 535 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-212ENST00000554467 CDK17Q00537 523 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 PTK2Q05397 1052 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 GNPTABQ3T906 1256 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 TMEM63BQ5T3F8 832 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 ERO1BQ86YB8 467 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 ANKRD13AQ8IZ07 590 aa12.72□□□□□ -0.37
SHMT2-212ENST00000554467 BRCA2P51587 3418 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 ADGRA3Q8IWK6 1321 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 A0A0G2JLL6 359 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 DENND3A2RUS2 1198 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 PSAPP07602 524 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 BRD2P25440 801 aaKnown RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 GCLMP48507 274 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 FMO5P49326 533 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 LY6KQ17RY6 165 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 MAP1SQ66K74 1059 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 IQCEQ6IPM2 695 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 PRRT2Q7Z6L0 340 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 DHX37Q8IY37 1157 aaKnown RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 TMEM143Q96AN5 459 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 ABCB6Q9NP58 842 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 DONSONQ9NYP3 566 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 PFASO15067 1338 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 NCK2O43639 380 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 GFPT2O94808 682 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 LYPLA2O95372 231 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 SERPING1P05155 500 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 NF2P35240 595 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 ARHGAP44Q17R89 818 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 ASTE1Q2TB18 679 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 SAMD3Q8N6K7 520 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 CCDC127Q96BQ5 260 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 ACCSQ96QU6 501 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 POP1Q99575 1024 aaKnown RBP12.71□□□□□ -0.37
SHMT2-212ENST00000554467 DMAC2Q9NW81 257 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 MYO6Q9UM54 1294 aa12.71□□□□□ -0.37
SHMT2-212ENST00000554467 STBD1O95210 358 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 CXCR5P32302 372 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 GJA5P36382 358 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 KCNV1Q6PIU1 500 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 ABHD15Q6UXT9 468 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 ZNF571Q7Z3V5 609 aaPredicted RBP12.71□□□□□ -0.38
SHMT2-212ENST00000554467 CHST13Q8NET6 341 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 PLEKHO2Q8TD55 490 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 HNRNPLLQ8WVV9 542 aaKnown RBP12.71□□□□□ -0.38
SHMT2-212ENST00000554467 KMT5AQ9NQR1 393 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 HSPBP1Q9NZL4 362 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 SUFUQ9UMX1 484 aa12.71□□□□□ -0.38
SHMT2-212ENST00000554467 ZMYND10O75800 440 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 CNMDO75829 334 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 ATP4AP20648 1035 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 UBA1P22314 1058 aaKnown RBP12.7□□□□□ -0.38
SHMT2-212ENST00000554467 MARK3P27448 753 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 PPATQ06203 517 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 DMP1Q13316 513 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-212ENST00000554467 BRD3Q15059 726 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 XRRA1Q6P2D8 792 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 CBWD2Q8IUF1 395 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 RIOX2Q8IUF8 465 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 ATP6V0A1Q93050 837 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 CCDC102AQ96A19 550 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 IQCDQ96DY2 449 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 XPNPEP1Q9NQW7 623 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 SMARCAL1Q9NZC9 954 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 WDR81Q562E7 1941 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 EMSYQ7Z589 1322 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 EIF3JO75822 258 aaKnown RBP12.7□□□□□ -0.38
SHMT2-212ENST00000554467 ADSSP30520 456 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 PPP3CAQ08209 521 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 BFSP1Q12934 665 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 IRF2BP2Q7Z5L9 587 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 CCDC91Q7Z6B0 441 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 TADA2BQ86TJ2 420 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 TRIM50Q86XT4 487 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 TMEM161BQ8NDZ6 487 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 FAM212AQ96EL1 285 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 CEP89Q96ST8 783 aa12.7□□□□□ -0.38
SHMT2-212ENST00000554467 RBPJLQ9UBG7 517 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms