RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, human

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88C-206	ENST00000553437	GPRC5C	Q9NQ84	441 aa		11.43	□□□□□ -0.58
CCDC88C-206	ENST00000553437	AGPAT5	Q9NUQ2	364 aa		11.43	□□□□□ -0.58
CCDC88C-206	ENST00000553437	LRWD1	Q9UFC0	647 aa		11.43	□□□□□ -0.58
CCDC88C-206	ENST00000553437	COG5	Q9UP83	839 aa		11.43	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PIN4	Q9Y237	131 aa	Known RBP	11.43	□□□□□ -0.58
CCDC88C-206	ENST00000553437	EVPL	Q92817	2033 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PP2D1	A8MPX8	630 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	USO1	O60763	962 aa	Known RBP	11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	CYP11B2	P19099	503 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	CCT6A	P40227	531 aa	Known RBP	11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	COL19A1	Q14993	1142 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	AMHR2	Q16671	573 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	TIGD5	Q53EQ6	642 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	TCEAL5	Q5H9L2	206 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	UBXN11	Q5T124	520 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	HAUS3	Q68CZ6	603 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PADI6	Q6TGC4	694 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	HLA-C	Q95604	372 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	NFKBIZ	Q9BYH8	718 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	FAM105A	Q9NUU6	356 aa		11.42	□□□□□ -0.58
CCDC88C-206	ENST00000553437	WDR81	Q562E7	1941 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	COL4A4	P53420	1690 aa	Predicted RBP	11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	MEIS3P2	A8K0S8	358 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	TSPAN1	O60635	241 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	SKI	P12755	728 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	BMP1	P13497	986 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	CDC25A	P30304	524 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	MBTD1	Q05BQ5	628 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	TFDP1	Q14186	410 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PCBP1	Q15365	356 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	TWF2	Q6IBS0	349 aa	Known RBP	11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	DTHD1	Q6ZMT9	781 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	MAEA	Q7L5Y9	396 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	MRPL10	Q7Z7H8	261 aa	Known RBP	11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	COLGALT1	Q8NBJ5	622 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	RNF169	Q8NCN4	708 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	MCPH1	Q8NEM0	835 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	HELQ	Q8TDG4	1101 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	SNX29	Q8TEQ0	813 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	LPP	Q93052	612 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	CCDC43	Q96MW1	224 aa	Known RBP	11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	NSUN3	Q9H649	340 aa	Known RBP	11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	KIAA1024	Q9UPX6	916 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PCDHB2	Q9Y5E7	798 aa		11.41	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PIEZO1	Q92508	2521 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	ARHGEF35	A5YM69	484 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	OFD1	O75665	1012 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	LAG3	P18627	525 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	IRS1	P35568	1242 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	RAB27A	P51159	221 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	KCNQ1	P51787	676 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	AGMO	Q6ZNB7	445 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	KCNK18	Q7Z418	384 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	ABI1	Q8IZP0	508 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	LRRC43	Q8N309	656 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	POF1B	Q8WVV4	589 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	BSND	Q8WZ55	320 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	INTS4	Q96HW7	963 aa	Known RBP	11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	RAB34	Q9BZG1	259 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	BHMT2	Q9H2M3	363 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	UBE2Z	Q9H832	354 aa	Predicted RBP	11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	AAAS	Q9NRG9	546 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	DDX19A	Q9NUU7	478 aa	Known RBP	11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	PCDHB12	Q9Y5F1	795 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	STK24	Q9Y6E0	443 aa		11.4	□□□□□ -0.58
CCDC88C-206	ENST00000553437	NCOR1	O75376	2440 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437		E9PMD0	336 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	INO80B-WBP1	J3KQ70	363 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437		K7ELQ4	463 aa	Predicted RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	B4GALT5	O43286	388 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	FGF18	O76093	207 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	ARF4	P18085	180 aa	Predicted RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	SYT1	P21579	422 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	AXL	P30530	894 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	PBX3	P40426	434 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	PLCB3	Q01970	1234 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	UBE3A	Q05086	875 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	HYAL1	Q12794	435 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	CSPP1	Q1MSJ5	1256 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	AAK1	Q2M2I8	961 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	LONRF3	Q496Y0	759 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	HYI	Q5T013	277 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	SPOUT1	Q5T280	376 aa	Known RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	KRT79	Q5XKE5	535 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	ARL6IP4	Q66PJ3	421 aa	Known RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	CDCA2	Q69YH5	1023 aa	Predicted RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	KCNT2	Q6UVM3	1135 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	BRAP	Q7Z569	592 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	SMG8	Q8ND04	991 aa	Known RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	RSPH1	Q8WYR4	309 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	SYMPK	Q92797	1274 aa	Known RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	SNX21	Q969T3	373 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	PABPC5	Q96DU9	382 aa	Known RBP	11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	CCDC51	Q96ER9	411 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	CPB2	Q96IY4	423 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	PNMA5	Q96PV4	448 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	FZD8	Q9H461	694 aa		11.39	□□□□□ -0.59
CCDC88C-206	ENST00000553437	POLD4	Q9HCU8	107 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms