RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 C5orf42Q9H799 3197 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 ATG2AQ2TAZ0 1938 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 SRGAP2CP0DJJ0 459 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 PBX3P40426 434 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 RNASELQ05823 741 aaKnown RBP14.24□□□□□ -0.13
LINC00643-202ENST00000553426 NCBP1Q09161 790 aaKnown RBP14.24□□□□□ -0.13
LINC00643-202ENST00000553426 NR5A1Q13285 461 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 SAFBQ15424 915 aaKnown RBP eCLIP14.24□□□□□ -0.13
LINC00643-202ENST00000553426 CALCRLQ16602 461 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 SRGAP1Q7Z6B7 1085 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 KSR1Q8IVT5 923 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 TPH2Q8IWU9 490 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 URGCPQ8TCY9 931 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 DYDC2Q96IM9 177 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 DHX33Q9H6R0 707 aaKnown RBP14.24□□□□□ -0.13
LINC00643-202ENST00000553426 RGL1Q9NZL6 768 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 USP15Q9Y4E8 981 aaPredicted RBP14.24□□□□□ -0.13
LINC00643-202ENST00000553426 PLXNA4Q9HCM2 1894 aa14.24□□□□□ -0.13
LINC00643-202ENST00000553426 MUC6Q6W4X9 2439 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 ZNF623O75123 536 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 ZC3H11AO75152 810 aaKnown RBP eCLIP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 GLP2RO95838 553 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 FDPSP14324 419 aaKnown RBP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 HOXB8P17481 243 aaPredicted RBP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 ATF7P17544 494 aaPredicted RBP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 TECP42680 631 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 BCAR1P56945 870 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 CYP4A11Q02928 519 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 LAMTOR4Q0VGL1 99 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 CTTNQ14247 550 aaKnown RBP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 EMC2Q15006 297 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 PCBP1Q15365 356 aaKnown RBP eCLIP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 NOMO2Q5JPE7 1267 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 TMEM184AQ6ZMB5 413 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 RNF135Q8IUD6 432 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 SLC39A11Q8N1S5 342 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 LPPQ93052 612 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 TMEM143Q96AN5 459 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 MTRQ99707 1265 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 PHF7Q9BWX1 381 aaPredicted RBP14.23□□□□□ -0.13
LINC00643-202ENST00000553426 IFT122Q9HBG6 1241 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 AGPAT5Q9NUQ2 364 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 INPP5FQ9Y2H2 1132 aa14.23□□□□□ -0.13
LINC00643-202ENST00000553426 HIDE1A8MVS5 230 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 NEMFO60524 1076 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 DTNBO60941 627 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 ERLIN2O94905 339 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 GIT2Q14161 759 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 TFDP1Q14186 410 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 MXD4Q14582 209 aaPredicted RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 LONRF3Q496Y0 759 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 HERC4Q5GLZ8 1057 aaPredicted RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 EARS2Q5JPH6 523 aaKnown RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 ANKRD54Q6NXT1 300 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 LLGL2Q6P1M3 1020 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 DIS3L2Q8IYB7 885 aaKnown RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 MRPL43Q8N983 215 aaKnown RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 RNF149Q8NC42 400 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 NSUN7Q8NE18 718 aaKnown RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 CASP10Q92851 521 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 FAM193BQ96PV7 902 aaPredicted RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 TTC12Q9H892 705 aaPredicted RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 BMP2KQ9NSY1 1161 aaPredicted RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 KANSL3Q9P2N6 904 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 WRAP73Q9P2S5 460 aaPredicted RBP14.22□□□□□ -0.13
LINC00643-202ENST00000553426 STK39Q9UEW8 545 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 MUTYHQ9UIF7 546 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 PCDHB2Q9Y5E7 798 aa14.22□□□□□ -0.13
LINC00643-202ENST00000553426 CNTNAP2Q9UHC6 1331 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 FAM205CA6NFA0 338 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 BTBD18B2RXH4 712 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 NT5C1B-RDH14C9J2C7 533 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 SLITRK3O94933 977 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 CXCL14O95715 111 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 TXKP42681 527 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 FOSBP53539 338 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 SPIRE1Q08AE8 756 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 TPRNQ4KMQ1 711 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 CES5AQ6NT32 575 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 FERMT3Q86UX7 667 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 VPS52Q8N1B4 723 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 ZNF579Q8NAF0 562 aaKnown RBP14.21□□□□□ -0.13
LINC00643-202ENST00000553426 CNNM3Q8NE01 707 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 TNFRSF25Q93038 417 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 RPGRIP1Q96KN7 1286 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 EIF2AK1Q9BQI3 630 aaKnown RBP14.21□□□□□ -0.13
LINC00643-202ENST00000553426 GBP3Q9H0R5 595 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 UBN1Q9NPG3 1134 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 ANKEF1Q9NU02 776 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 TBC1D13Q9NVG8 400 aa14.21□□□□□ -0.13
LINC00643-202ENST00000553426 C2orf71A6NGG8 1288 aa14.2□□□□□ -0.14
LINC00643-202ENST00000553426 LOC730098B7Z3J9 87 aa14.2□□□□□ -0.14
LINC00643-202ENST00000553426 OFD1O75665 1012 aa14.2□□□□□ -0.14
LINC00643-202ENST00000553426 DGAT1O75907 488 aa14.2□□□□□ -0.14
LINC00643-202ENST00000553426 LYPLA2O95372 231 aa14.2□□□□□ -0.14
LINC00643-202ENST00000553426 LARGE1O95461 756 aa14.2□□□□□ -0.14
LINC00643-202ENST00000553426 RBM10P98175 930 aaKnown RBP14.2□□□□□ -0.14
LINC00643-202ENST00000553426 CBX2Q14781 532 aaPredicted RBP14.2□□□□□ -0.14
LINC00643-202ENST00000553426 DDX53Q86TM3 631 aaKnown RBP14.2□□□□□ -0.14
LINC00643-202ENST00000553426 VN1R2Q8NFZ6 395 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms