RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	MAGEA9	P43362	315 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	ANTXR2	P58335	489 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	CSTF1	Q05048	431 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	RNASEL	Q05823	741 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	HDAC7	Q8WUI4	952 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	SMG7	Q92540	1137 aa	Known RBP	13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	LPP	Q93052	612 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF707	Q96C28	371 aa	Predicted RBP	13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	IL25	Q9H293	177 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	USP18	Q9UMW8	372 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425	NUMBL	Q9Y6R0	609 aa		13.52	□□□□□ -0.25
PTCH1-222	ENST00000551425		E7EWF7	191 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	B4GALT3	O60512	393 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	OFD1	O75665	1012 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	RFPL2	O75678	378 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	SREBF1	P36956	1147 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	PRKCQ	Q04759	706 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	PPM1J	Q5JR12	505 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF280B	Q86YH2	543 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	PLEKHM2	Q8IWE5	1019 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	CMTR1	Q8N1G2	835 aa	Known RBP	13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	LRRC71	Q8N4P6	559 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF668	Q96K58	619 aa	Predicted RBP	13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM167A	Q96KS9	214 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	RPS6KC1	Q96S38	1066 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	ANO3	Q9BYT9	981 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	PARD6A	Q9NPB6	346 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	SSX2IP	Q9Y2D8	614 aa		13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.51	□□□□□ -0.25
PTCH1-222	ENST00000551425	hCG_1642624	A0A1W2PR95	340 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	MEIS3P2	A8K0S8	358 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	SLC30A4	O14863	429 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	TEX28	O15482	410 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF623	O75123	536 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	GLUD1	P00367	558 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	C1R	P00736	705 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	SOD2	P04179	222 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	UROD	P06132	367 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	GPC5	P78333	572 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	COL9A2	Q14055	689 aa	Predicted RBP	13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF746	Q6NUN9	644 aa	Predicted RBP	13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	NETO1	Q8TDF5	533 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	NLRP7	Q8WX94	980 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	PGBD1	Q96JS3	809 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	SCLT1	Q96NL6	688 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	TMEM175	Q9BSA9	504 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	MTA3	Q9BTC8	594 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	GBP3	Q9H0R5	595 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	RIC8A	Q9NPQ8	531 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	GMEB2	Q9UKD1	530 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	INPP5F	Q9Y2H2	1132 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	MTF2	Q9Y483	593 aa	Predicted RBP	13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	TAF6L	Q9Y6J9	622 aa		13.5	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM170B	A6NMN3	283 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM86B1	E9PN63	330 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	IPO5	O00410	1097 aa	Known RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	C2CD2L	O14523	706 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	CSDE1	O75534	798 aa	Known RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	DDHD2	O94830	711 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	ALDH2	P05091	517 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	PSAP	P07602	524 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM86B2	P0C5J1	330 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF76	P36508	570 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	RAB27A	P51159	221 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	AK2	P54819	239 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	CDC42EP1	Q00587	391 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	SNW1	Q13573	536 aa	Known RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	MLF2	Q15773	248 aa	Predicted RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	LONRF3	Q496Y0	759 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	TWF2	Q6IBS0	349 aa	Known RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	GET4	Q7L5D6	327 aa	Predicted RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	HEATR3	Q7Z4Q2	680 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	PLA2G4D	Q86XP0	818 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	HERC2P3	Q9BVR0	1158 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	NT5C3A	Q9H0P0	336 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	PLEKHA4	Q9H4M7	779 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	PIDD1	Q9HB75	910 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	RXFP1	Q9HBX9	757 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	TBC1D22B	Q9NU19	505 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM105A	Q9NUU6	356 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZDHHC7	Q9NXF8	308 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	RALY	Q9UKM9	306 aa	Known RBP	13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	PCDHA10	Q9Y5I2	948 aa		13.49	□□□□□ -0.25
PTCH1-222	ENST00000551425	DOCK8	Q8NF50	2099 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	IGLV3-22	A0A075B6J6	115 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	EFEMP2	O95967	443 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	CALM1	P0DP23	149 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	CALM2	P0DP24	149 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	CALM3	P0DP25	149 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	AP3B2	Q13367	1082 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	UBXN2B	Q14CS0	331 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	SLC44A4	Q53GD3	710 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	RNF168	Q8IYW5	571 aa	Predicted RBP	13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	TMTC2	Q8N394	836 aa		13.48	□□□□□ -0.25

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