RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SMTNP53814 917 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 KMT5BQ4FZB7 885 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 IFNLR1Q8IU57 520 aaPredicted RBP23.38■■□□□ 1.33
VPS29-206ENST00000549578 ZBTB8OSQ8IWT0 167 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 NTPCRQ9BSD7 190 aaKnown RBP23.38■■□□□ 1.33
VPS29-206ENST00000549578 NFKBIZQ9BYH8 718 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 ARHGAP28Q9P2N2 729 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 SEL1LQ9UBV2 794 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 INO80B-WBP1J3KQ70 363 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 K7ENM7 598 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 CD52P31358 61 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 NCKAP1LP55160 1127 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 MBTD1Q05BQ5 628 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 NFKBIBQ15653 356 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 TSHZ1Q6ZSZ6 1077 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 SRGAP1Q7Z6B7 1085 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 DEFB128Q7Z7B8 93 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 FAM228AQ86W67 206 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 TMEM199Q8N511 208 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 TMEM161BQ8NDZ6 487 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 FGFBP2Q9BYJ0 223 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 INO80BQ9C086 356 aaPredicted RBP23.37■■□□□ 1.33
VPS29-206ENST00000549578 NUP62CLQ9H1M0 184 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 C2orf40Q9H1Z8 148 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 MRPL44Q9H9J2 332 aaKnown RBP23.37■■□□□ 1.33
VPS29-206ENST00000549578 EXOC1Q9NV70 894 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 PCDHA5Q9Y5H7 936 aa23.37■■□□□ 1.33
VPS29-206ENST00000549578 RPS6KA5O75582 802 aa23.36■■□□□ 1.33
VPS29-206ENST00000549578 PTMSP20962 102 aa23.36■■□□□ 1.33
VPS29-206ENST00000549578 EHHADHQ08426 723 aa23.36■■□□□ 1.33
VPS29-206ENST00000549578 OLFML3Q9NRN5 406 aa23.36■■□□□ 1.33
VPS29-206ENST00000549578 KCNG1Q9UIX4 513 aa23.36■■□□□ 1.33
VPS29-206ENST00000549578 TET1Q8NFU7 2136 aa23.36■■□□□ 1.33
VPS29-206ENST00000549578 DENND3A2RUS2 1198 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 SMC2O95347 1197 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 PARNO95453 639 aaKnown RBP23.35■■□□□ 1.33
VPS29-206ENST00000549578 PAK2Q13177 524 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 FAM26FQ5R3K3 315 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 HAUS6Q7Z4H7 955 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 USP38Q8NB14 1042 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 GLIS3Q8NEA6 775 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 SMARCE1Q969G3 411 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 VWCEQ96DN2 955 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 CCDC113Q9H0I3 377 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 ST3GAL5Q9UNP4 418 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 SQORQ9Y6N5 450 aa23.35■■□□□ 1.33
VPS29-206ENST00000549578 CXCL10P02778 98 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 MAPTP10636 758 aaKnown RBP23.34■■□□□ 1.33
VPS29-206ENST00000549578 RFC2P35250 354 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 CASP5P51878 434 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 EFNA5P52803 228 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 NFX1Q12986 1120 aaKnown RBP23.34■■□□□ 1.33
VPS29-206ENST00000549578 ZC2HC1CQ53FD0 456 aaPredicted RBP23.34■■□□□ 1.33
VPS29-206ENST00000549578 TAS1R3Q7RTX0 852 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 CATSPER4Q7RTX7 472 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 ZNF720Q7Z2F6 126 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 SPATA20Q8TB22 786 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 IFIH1Q9BYX4 1025 aaKnown RBP23.34■■□□□ 1.33
VPS29-206ENST00000549578 ERVK-5Q9HDB9 667 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 PADI3Q9ULW8 664 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 PHLPP2Q6ZVD8 1323 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 CEP290O15078 2479 aa23.34■■□□□ 1.33
VPS29-206ENST00000549578 K7ERI5 159 aa23.33■■□□□ 1.33
VPS29-206ENST00000549578 GCNT3O95395 438 aa23.33■■□□□ 1.33
VPS29-206ENST00000549578 MYBP10242 640 aa23.33■■□□□ 1.33
VPS29-206ENST00000549578 SFPQP23246 707 aaKnown RBP eCLIP23.33■■□□□ 1.33
VPS29-206ENST00000549578 FPGSQ05932 587 aa23.33■■□□□ 1.33
VPS29-206ENST00000549578 CCDC47Q96A33 483 aaKnown RBP23.33■■□□□ 1.33
VPS29-206ENST00000549578 LBHD1Q9BQE6 289 aaPredicted RBP23.33■■□□□ 1.33
VPS29-206ENST00000549578 SLC39A2Q9NP94 309 aa23.33■■□□□ 1.33
VPS29-206ENST00000549578 USP20Q9Y2K6 914 aa23.33■■□□□ 1.33
VPS29-206ENST00000549578 GPR182O15218 404 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 RHOBTB3O94955 611 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 EDN1P05305 212 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 PRKCBP05771 671 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 ACRP10323 421 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 KCNB1Q14721 858 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 MAPK6Q16659 721 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 AMHR2Q16671 573 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 TCTN1Q2MV58 587 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 PLEKHG4Q58EX7 1191 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 DBF4BQ8NFT6 615 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 GSDMAQ96QA5 445 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 FZD8Q9H461 694 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 TMEM134Q9H6X4 195 aa23.33■■□□□ 1.32
VPS29-206ENST00000549578 H0YCG3 227 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 B4GALT5O43286 388 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 ERLIN2O94905 339 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 SARSP49591 514 aaKnown RBP23.32■■□□□ 1.32
VPS29-206ENST00000549578 STK4Q13043 487 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 KLHL40Q2TBA0 621 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 SLC17A8Q8NDX2 589 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 ST6GALNAC4Q9H4F1 302 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 PRMT7Q9NVM4 692 aaPredicted RBP23.32■■□□□ 1.32
VPS29-206ENST00000549578 TMEM63CQ9P1W3 806 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 KIAA1468Q9P260 1216 aa23.32■■□□□ 1.32
VPS29-206ENST00000549578 TTLL13PA6NNM8 815 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 H0YGN5 161 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 TSPAN1O60635 241 aa23.31■■□□□ 1.32
VPS29-206ENST00000549578 PPP1R37O75864 691 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms