RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 DDX11L8A8MPP1 907 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 DKC1O60832 514 aaKnown RBP eCLIP14.42□□□□□ -0.1
PTCH1-218ENST00000548945 CXCL14O95715 111 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 PPP2R5CQ13362 524 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 NOMO2Q5JPE7 1267 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 ANO5Q75V66 913 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 KRT25Q7Z3Z0 450 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 DDX53Q86TM3 631 aaKnown RBP14.42□□□□□ -0.1
PTCH1-218ENST00000548945 RHPN2Q8IUC4 686 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 VPS52Q8N1B4 723 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 IGSF21Q96ID5 467 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 RIPOR3Q96MK2 946 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 FAM20AQ96MK3 541 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 ZBP1Q9H171 429 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 FAM105AQ9NUU6 356 aa14.42□□□□□ -0.1
PTCH1-218ENST00000548945 DDX25Q9UHL0 483 aaKnown RBP14.42□□□□□ -0.1
PTCH1-218ENST00000548945 PIN4Q9Y237 131 aaKnown RBP14.42□□□□□ -0.1
PTCH1-218ENST00000548945 MYO15AQ9UKN7 3530 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 TMEM150BA6NC51 233 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 NT5C1B-RDH14C9J2C7 533 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 ZC3H11AO75152 810 aaKnown RBP eCLIP14.41□□□□□ -0.1
PTCH1-218ENST00000548945 CTSAP10619 480 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 GCFC2P16383 781 aaKnown RBP14.41□□□□□ -0.1
PTCH1-218ENST00000548945 QARSP47897 775 aaKnown RBP14.41□□□□□ -0.1
PTCH1-218ENST00000548945 TCF15Q12870 199 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 PPP4R3AQ6IN85 833 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 KIAA1841Q6NSI8 718 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 CATSPER4Q7RTX7 472 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 ZBTB33Q86T24 672 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 SLC7A3Q8WY07 619 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 PGBD4Q96DM1 585 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 APOL5Q9BWW9 433 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 POMKQ9H5K3 350 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 CYP26B1Q9NR63 512 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 AGPAT5Q9NUQ2 364 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 TBC1D13Q9NVG8 400 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 SORCS3Q9UPU3 1222 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 FAM186AA6NE01 2351 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 ARID2Q68CP9 1835 aa14.41□□□□□ -0.1
PTCH1-218ENST00000548945 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.4□□□□□ -0.1
PTCH1-218ENST00000548945 GAS2O43903 313 aaKnown RBP14.4□□□□□ -0.1
PTCH1-218ENST00000548945 OFD1O75665 1012 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 GALTP07902 379 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 AVPR2P30518 371 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 RNASELQ05823 741 aaKnown RBP14.4□□□□□ -0.1
PTCH1-218ENST00000548945 MTMR3Q13615 1198 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 INF2Q27J81 1249 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 PPFIBP1Q86W92 1011 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 TMEM173Q86WV6 379 aaPredicted RBP14.4□□□□□ -0.1
PTCH1-218ENST00000548945 TMEM87AQ8NBN3 555 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 KREMEN2Q8NCW0 462 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 LPPQ93052 612 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 NLRP4Q96MN2 994 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 NAP1L4Q99733 375 aaKnown RBP14.4□□□□□ -0.1
PTCH1-218ENST00000548945 SH2D3AQ9BRG2 576 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 DHX33Q9H6R0 707 aaKnown RBP14.4□□□□□ -0.1
PTCH1-218ENST00000548945 NRDE2Q9H7Z3 1164 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 IFT122Q9HBG6 1241 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 KCNMB3Q9NPA1 279 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 TSHZ2Q9NRE2 1034 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 VAV3Q9UKW4 847 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 USTQ9Y2C2 406 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 COL4A3BPQ9Y5P4 624 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 CNTNAP2Q9UHC6 1331 aa14.4□□□□□ -0.1
PTCH1-218ENST00000548945 C2CD4DB7Z1M9 353 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 EML1O00423 815 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 TBX3O15119 743 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 SLC37A4O43826 429 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 CDKL5O76039 1030 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 P4HBP07237 508 aaKnown RBP14.39□□□□□ -0.11
PTCH1-218ENST00000548945 CA8P35219 290 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 RFC5P40937 340 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 LETM2Q2VYF4 491 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 ATAT1Q5SQI0 421 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 SRGAP1Q7Z6B7 1085 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 MRPL10Q7Z7H8 261 aaKnown RBP14.39□□□□□ -0.11
PTCH1-218ENST00000548945 ZDHHC14Q8IZN3 488 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 PLCD3Q8N3E9 789 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 URGCPQ8TCY9 931 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 SLC22A17Q8WUG5 538 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 PSPC1Q8WXF1 523 aaKnown RBP14.39□□□□□ -0.11
PTCH1-218ENST00000548945 PHF20Q9BVI0 1012 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 KANSL3Q9P2N6 904 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 PCDHB2Q9Y5E7 798 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 C2orf16Q68DN1 1984 aa14.39□□□□□ -0.11
PTCH1-218ENST00000548945 DMDP11532 3685 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 CCDC194A0A1B0GVG4 234 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 MEIS3P2A8K0S8 358 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 ASAP2O43150 1006 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 XBP1P17861 261 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 SP100P23497 879 aaPredicted RBP14.38□□□□□ -0.11
PTCH1-218ENST00000548945 VCPP55072 806 aaKnown RBP14.38□□□□□ -0.11
PTCH1-218ENST00000548945 PCBP1Q15365 356 aaKnown RBP eCLIP14.38□□□□□ -0.11
PTCH1-218ENST00000548945 RARS2Q5T160 578 aaKnown RBP14.38□□□□□ -0.11
PTCH1-218ENST00000548945 PLA2G4FQ68DD2 849 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 NEK8Q86SG6 692 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 KSR1Q8IVT5 923 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 C4orf19Q8IY42 314 aa14.38□□□□□ -0.11
PTCH1-218ENST00000548945 TDRD5Q8NAT2 981 aaKnown RBP14.38□□□□□ -0.11
PTCH1-218ENST00000548945 BCL7CQ8WUZ0 217 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms