RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TMEM143Q96AN5 459 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 FAM118BQ9BPY3 351 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 TUFT1Q9NNX1 390 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 NAGPAQ9UK23 515 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 FAM86B1E9PN63 330 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 CLDN3O15551 220 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 FAM86B2P0C5J1 330 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 KRT76Q01546 638 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 COG2Q14746 738 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 HADHQ16836 314 aaKnown RBP16.84■□□□□ 0.29
CUX1-211ENST00000546411 RNF34Q969K3 372 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 ZDHHC15Q96MV8 337 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 FAM208AQ9UK61 1670 aaKnown RBP16.84■□□□□ 0.29
CUX1-211ENST00000546411 MYO3BQ8WXR4 1341 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 TARSL2A2RTX5 802 aaKnown RBP16.84■□□□□ 0.29
CUX1-211ENST00000546411 TBX3O15119 743 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 KLRC4O43908 158 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 HOXA7P31268 230 aaPredicted RBP16.84■□□□□ 0.29
CUX1-211ENST00000546411 KCNJ1P48048 391 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 KRT81Q14533 505 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 FAM160B1Q5W0V3 765 aa16.84■□□□□ 0.29
CUX1-211ENST00000546411 H7C0C1 242 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 ATP5OP48047 213 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 JAK3P52333 1124 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 TMED2Q15363 201 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 NAB2Q15742 525 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 AGPAT1Q99943 283 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 HSD3B7Q9H2F3 369 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 ZWILCHQ9H900 591 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 PCDHA10Q9Y5I2 948 aa16.83■□□□□ 0.29
CUX1-211ENST00000546411 LRRC10BA6NIK2 292 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 POLRMTO00411 1230 aaKnown RBP16.83■□□□□ 0.28
CUX1-211ENST00000546411 POLR2BP30876 1174 aaKnown RBP16.83■□□□□ 0.28
CUX1-211ENST00000546411 RSBN1LQ6PCB5 846 aaPredicted RBP16.83■□□□□ 0.28
CUX1-211ENST00000546411 FAM151AQ8WW52 585 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 TCP11Q8WWU5 503 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 RUNDC3BQ96NL0 473 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 ZRANB2O95218 330 aaKnown RBP eCLIP16.83■□□□□ 0.28
CUX1-211ENST00000546411 PON1P27169 355 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 RPS6P62753 249 aaKnown RBP16.83■□□□□ 0.28
CUX1-211ENST00000546411 CDO1Q16878 200 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 FAM133BQ5BKY9 247 aaKnown RBP16.83■□□□□ 0.28
CUX1-211ENST00000546411 STK33Q9BYT3 514 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 KLHL11Q9NVR0 708 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 PITPNM2Q9BZ72 1349 aa16.83■□□□□ 0.28
CUX1-211ENST00000546411 SUPT20HL1Q3ZLR7 823 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 FBXL13Q8NEE6 735 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 MCPH1Q8NEM0 835 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 ADPGKQ9BRR6 497 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 POLR3FQ9H1D9 316 aaPredicted RBP16.82■□□□□ 0.28
CUX1-211ENST00000546411 ZNRF3Q9ULT6 936 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 MAD1L1Q9Y6D9 718 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 WDR91A4D1P6 747 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 TMEM150BA6NC51 233 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 RCCD1A6NED2 376 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 HMGB1P1B2RPK0 211 aaPredicted RBP16.82■□□□□ 0.28
CUX1-211ENST00000546411 GOLGA8MH3BSY2 632 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 SLC8A3P57103 927 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 MTM1Q13496 603 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 ALCAMQ13740 583 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 CCDC137Q6PK04 289 aaKnown RBP16.82■□□□□ 0.28
CUX1-211ENST00000546411 ARHGEF2Q92974 986 aaKnown RBP16.82■□□□□ 0.28
CUX1-211ENST00000546411 TSNARE1Q96NA8 513 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 ATP6V0A4Q9HBG4 840 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.82■□□□□ 0.28
CUX1-211ENST00000546411 YWHAGP61981 247 aaKnown RBP eCLIP16.82■□□□□ 0.28
CUX1-211ENST00000546411 TNFRSF25Q93038 417 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 FAM149B1Q96BN6 582 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 TBC1D31Q96DN5 1066 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 ZIM3Q96PE6 472 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 TAAR1Q96RJ0 339 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 AGPAT3Q9NRZ7 376 aa16.82■□□□□ 0.28
CUX1-211ENST00000546411 MED1Q15648 1581 aaPredicted RBP16.82■□□□□ 0.28
CUX1-211ENST00000546411 BASP1P80723 227 aaKnown RBP16.81■□□□□ 0.28
CUX1-211ENST00000546411 NAA25Q14CX7 972 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 LRRC14Q15048 493 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 SLC17A8Q8NDX2 589 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 CPA5Q8WXQ8 436 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 UNC45AQ9H3U1 944 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 MRPL47Q9HD33 250 aaKnown RBP16.81■□□□□ 0.28
CUX1-211ENST00000546411 KLHL14Q9P2G3 628 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 FOXN3O00409 490 aaPredicted RBP16.81■□□□□ 0.28
CUX1-211ENST00000546411 C6orf163Q5TEZ5 329 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 RFX6Q8HWS3 928 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 IRF2BP1Q8IU81 584 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 ELAC2Q9BQ52 826 aaKnown RBP16.81■□□□□ 0.28
CUX1-211ENST00000546411 CBWD1Q9BRT8 395 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.81■□□□□ 0.28
CUX1-211ENST00000546411 SYNGAP1Q96PV0 1343 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 NFIBO00712 420 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 FGFR4P22455 802 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 CASP5P51878 434 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 HDLBPQ00341 1268 aaKnown RBP16.81■□□□□ 0.28
CUX1-211ENST00000546411 STXBP2Q15833 593 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 ATG4CQ96DT6 458 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 OSGEPQ9NPF4 335 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 PNMA2Q9UL42 364 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 COMMD10Q9Y6G5 202 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 SPATA31A6Q5VVP1 1343 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 MIF4GDA9UHW6 222 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms