RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SHCBP1Q8NEM2 672 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 TBC1D22BQ9NU19 505 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 BAIAP2L1Q9UHR4 511 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ESYT2A0FGR8 921 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ARHGAP10A1A4S6 786 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 MEI4A8MW99 385 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 WDR64B1ANS9 1081 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 RSPH10B2B2RC85 870 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 P4HA2O15460 535 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 SPAG7O75391 227 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 FGAP02671 866 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 RSPH10BP0C881 870 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 GCKP35557 465 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 TFDP2Q14188 446 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 PFKFB3Q16875 520 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-211ENST00000543710 DNAJC24Q6P3W2 148 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ALKBH8Q96BT7 664 aaKnown RBP8.34□□□□□ -1.07
VPS13D-211ENST00000543710 SNX25Q9H3E2 840 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 GOLPH3LQ9H4A5 285 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 PREX1Q8TCU6 1659 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 KRT37O76014 449 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 LBX1P52954 281 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 SOX10P56693 466 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ST8SIA6P61647 398 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 AP2B1P63010 937 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 GUCY2DQ02846 1103 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 PRKCQQ04759 706 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 CYP4A22Q5TCH4 519 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 PRAMEF18Q5VWM3 479 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ITPRIPL1Q6GPH6 555 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ACAD11Q709F0 780 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 RSRC2Q7L4I2 434 aaKnown RBP8.34□□□□□ -1.07
VPS13D-211ENST00000543710 SNF8Q96H20 258 aa8.34□□□□□ -1.07
VPS13D-211ENST00000543710 ORC4O43929 436 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 P4HBP07237 508 aaKnown RBP8.34□□□□□ -1.08
VPS13D-211ENST00000543710 GJB1P08034 283 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 USH1GQ495M9 461 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 TMEM179Q6ZVK1 233 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 TADA2BQ86TJ2 420 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 PDCD7Q8N8D1 485 aaKnown RBP8.34□□□□□ -1.08
VPS13D-211ENST00000543710 PSPC1Q8WXF1 523 aaKnown RBP8.34□□□□□ -1.08
VPS13D-211ENST00000543710 SLC7A3Q8WY07 619 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 KRT35Q92764 455 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 ZNF653Q96CK0 615 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 FMO2Q99518 471 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 ROPN1BQ9BZX4 212 aaPredicted RBP8.34□□□□□ -1.08
VPS13D-211ENST00000543710 ROPN1Q9HAT0 212 aaPredicted RBP8.34□□□□□ -1.08
VPS13D-211ENST00000543710 ARHGAP26Q9UNA1 814 aa8.34□□□□□ -1.08
VPS13D-211ENST00000543710 SMG5Q9UPR3 1016 aaKnown RBP8.34□□□□□ -1.08
VPS13D-211ENST00000543710 SGK1O00141 431 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TMCC1O94876 653 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 UPP2O95045 317 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 RXRAP19793 462 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 SPP2Q13103 211 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 PRR16Q569H4 304 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 SPDYCQ5MJ68 293 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 PLIN2Q99541 437 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 ACAD9Q9H845 621 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 CREBZFQ9NS37 354 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 KRT38O76015 456 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 GRK4P32298 578 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 CYP2J2P51589 502 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 PRELPP51888 382 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 PHEXP78562 749 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 NAALADL2Q58DX5 795 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TBC1D9BQ66K14 1250 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 FAM117BQ6P1L5 589 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 CATSPER4Q7RTX7 472 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 ZNF677Q86XU0 584 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 NELFCDQ8IXH7 590 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 ANKRD42Q8N9B4 389 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 DDX50Q9BQ39 737 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 H7C1W4 665 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TBX3O15119 743 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 AGTP01019 485 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 NR2F2P24468 414 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 GUCY2FP51841 1108 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 MTA1Q13330 715 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 BYSLQ13895 437 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 ADRM1Q16186 407 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 ARHGAP44Q17R89 818 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 HSP90AA4PQ58FG1 418 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 DAB2IPQ5VWQ8 1189 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TRMT10CQ7L0Y3 403 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 PRPF38AQ8NAV1 312 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TRERF1Q96PN7 1200 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 ABHD10Q9NUJ1 306 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 LIMA1Q9UHB6 759 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 SERPINB13Q9UIV8 391 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TLK1Q9UKI8 766 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 MEIS1O00470 390 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 CXCL11O14625 94 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 CAPN9O14815 690 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 WDR46O15213 610 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 PARNO95453 639 aaKnown RBP8.33□□□□□ -1.08
VPS13D-211ENST00000543710 SERPINB9P50453 376 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TSPY1Q01534 308 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 STAT4Q14765 748 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 TAF11Q15544 211 aa8.33□□□□□ -1.08
VPS13D-211ENST00000543710 EFL1Q7Z2Z2 1120 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms