RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 TBC1D13Q9NVG8 400 aa13.47□□□□□ -0.25
CBX3P4-202ENST00000540428 DDX25Q9UHL0 483 aaKnown RBP13.47□□□□□ -0.25
CBX3P4-202ENST00000540428 SORCS3Q9UPU3 1222 aa13.47□□□□□ -0.25
CBX3P4-202ENST00000540428 PIN4Q9Y237 131 aaKnown RBP13.47□□□□□ -0.25
CBX3P4-202ENST00000540428 CYP46A1Q9Y6A2 500 aa13.47□□□□□ -0.25
CBX3P4-202ENST00000540428 DDX11L8A8MPP1 907 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 OFD1O75665 1012 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 GALTP07902 379 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 AVPR2P30518 371 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 QARSP47897 775 aaKnown RBP13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 PPP2R5CQ13362 524 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 MTMR3Q13615 1198 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 NOMO2Q5JPE7 1267 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 PPP4R3AQ6IN85 833 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 KIAA1841Q6NSI8 718 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 CATSPER4Q7RTX7 472 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 PPFIBP1Q86W92 1011 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 TMEM173Q86WV6 379 aaPredicted RBP13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 TMEM87AQ8NBN3 555 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 KREMEN2Q8NCW0 462 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 SLC7A3Q8WY07 619 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 FAM20AQ96MK3 541 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 NLRP4Q96MN2 994 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 SH2D3AQ9BRG2 576 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 CYP26B1Q9NR63 512 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 AGPAT5Q9NUQ2 364 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 USTQ9Y2C2 406 aa13.46□□□□□ -0.25
CBX3P4-202ENST00000540428 TRIOO75962 3097 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 C2CD4DB7Z1M9 353 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 TBX3O15119 743 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 GAS2O43903 313 aaKnown RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 P4HBP07237 508 aaKnown RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 GCFC2P16383 781 aaKnown RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 CA8P35219 290 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 RNASELQ05823 741 aaKnown RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 INF2Q27J81 1249 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 ATAT1Q5SQI0 421 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 SRGAP1Q7Z6B7 1085 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 ZDHHC14Q8IZN3 488 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 PLCD3Q8N3E9 789 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 LPPQ93052 612 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 NAP1L4Q99733 375 aaKnown RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 DHX33Q9H6R0 707 aaKnown RBP13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 IFT122Q9HBG6 1241 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 KCNMB3Q9NPA1 279 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 TSHZ2Q9NRE2 1034 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 KANSL3Q9P2N6 904 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 VAV3Q9UKW4 847 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 COL4A3BPQ9Y5P4 624 aa13.45□□□□□ -0.26
CBX3P4-202ENST00000540428 CNTNAP2Q9UHC6 1331 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 CCDC194A0A1B0GVG4 234 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 MEIS3P2A8K0S8 358 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 EML1O00423 815 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 SLC37A4O43826 429 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 CDKL5O76039 1030 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 SP100P23497 879 aaPredicted RBP13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 RFC5P40937 340 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 VCPP55072 806 aaKnown RBP13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 LETM2Q2VYF4 491 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 RARS2Q5T160 578 aaKnown RBP13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 PLA2G4FQ68DD2 849 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 MRPL10Q7Z7H8 261 aaKnown RBP13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 NEK8Q86SG6 692 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 KSR1Q8IVT5 923 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 C4orf19Q8IY42 314 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 URGCPQ8TCY9 931 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 SLC22A17Q8WUG5 538 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 PSPC1Q8WXF1 523 aaKnown RBP13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 PHOX2BQ99453 314 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 TMEM175Q9BSA9 504 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 PHF20Q9BVI0 1012 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 CDH22Q9UJ99 828 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 INPP5FQ9Y2H2 1132 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 PCDHB2Q9Y5E7 798 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 ZDBF2Q9HCK1 2354 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 WDFY4Q6ZS81 3184 aa13.44□□□□□ -0.26
CBX3P4-202ENST00000540428 WDR81Q562E7 1941 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 ASAP2O43150 1006 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 BRD1O95696 1058 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 EPCAMP16422 314 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 XBP1P17861 261 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 SLC11A1P49279 550 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 NPEPPSP55786 919 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 PCBP1Q15365 356 aaKnown RBP eCLIP13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 EPHA7Q15375 998 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 PTPN14Q15678 1187 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 AGMOQ6ZNB7 445 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 TDRD5Q8NAT2 981 aaKnown RBP13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 CNNM3Q8NE01 707 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 BCL7CQ8WUZ0 217 aaPredicted RBP13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 TCP11Q8WWU5 503 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 AUTS2Q8WXX7 1259 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 CEP170P1Q96L14 293 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 AIFM3Q96NN9 605 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 EMILIN2Q9BXX0 1053 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 SFXN1Q9H9B4 322 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 RSAD1Q9HA92 442 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 DNAJB4Q9UDY4 337 aa13.43□□□□□ -0.26
CBX3P4-202ENST00000540428 DBR1Q9UK59 544 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms