RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TIPINQ9BVW5 301 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 NFKBIZQ9BYH8 718 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 IKZF4Q9H2S9 585 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 ARHGAP28Q9P2N2 729 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 PRKAG2Q9UGJ0 569 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 ODF2LQ9ULJ1 636 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 ST3GAL5Q9UNP4 418 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 SQORQ9Y6N5 450 aa14.37□□□□□ -0.11
CCDC42-202ENST00000539522 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.36□□□□□ -0.11
CCDC42-202ENST00000539522 ASAP2O43150 1006 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 B4GALT5O43286 388 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 PPP1R37O75864 691 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 RPLP2P05387 115 aaKnown RBP14.36□□□□□ -0.11
CCDC42-202ENST00000539522 PLS3P13797 630 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 NCKAP1LP55160 1127 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 DPYDQ12882 1025 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 SHHQ15465 462 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 SFR1Q86XK3 245 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 TMEM161BQ8NDZ6 487 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 KCNN1Q92952 543 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 IFIH1Q9BYX4 1025 aaKnown RBP14.36□□□□□ -0.11
CCDC42-202ENST00000539522 FZD8Q9H461 694 aa14.36□□□□□ -0.11
CCDC42-202ENST00000539522 LRRIQ4A6NIV6 560 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 SLC16A4O15374 487 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 TSPAN1O60635 241 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 LETM1O95202 739 aaPredicted RBP14.35□□□□□ -0.11
CCDC42-202ENST00000539522 NMT1P30419 496 aaKnown RBP14.35□□□□□ -0.11
CCDC42-202ENST00000539522 HOXD13P35453 343 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 PPIGQ13427 754 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC42-202ENST00000539522 UBXN11Q5T124 520 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC42-202ENST00000539522 TMCO2Q7Z6W1 182 aaPredicted RBP14.35□□□□□ -0.11
CCDC42-202ENST00000539522 SPIRE2Q8WWL2 714 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 DRC1Q96MC2 740 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 GCOM2Q9BZD3 368 aaPredicted RBP14.35□□□□□ -0.11
CCDC42-202ENST00000539522 MAGEF1Q9HAY2 307 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 DACT1Q9NYF0 836 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 USP25Q9UHP3 1055 aa14.35□□□□□ -0.11
CCDC42-202ENST00000539522 ABLIM1O14639 778 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 RPS6KA5O75582 802 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 PARNO95453 639 aaKnown RBP14.34□□□□□ -0.11
CCDC42-202ENST00000539522 MAPTP10636 758 aaKnown RBP14.34□□□□□ -0.11
CCDC42-202ENST00000539522 BMP8BP34820 402 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 DEFB103AP81534 67 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 KCNA1Q09470 495 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 COASYQ13057 564 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 PNOCQ13519 176 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 ZC2HC1CQ53FD0 456 aaPredicted RBP14.34□□□□□ -0.11
CCDC42-202ENST00000539522 NT5DC1Q5TFE4 455 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 FAM109BQ6ICB4 259 aaPredicted RBP14.34□□□□□ -0.11
CCDC42-202ENST00000539522 CAVIN1Q6NZI2 390 aaKnown RBP14.34□□□□□ -0.11
CCDC42-202ENST00000539522 CNKSR3Q6P9H4 555 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 OTOP2Q7RTS6 562 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 SRGAP1Q7Z6B7 1085 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 CNNM3Q8NE01 707 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 SPATA20Q8TB22 786 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 HERVK_113Q902F9 699 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 TIGD1Q96MW7 591 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 C17orf75Q9HAS0 396 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 PARVGQ9HBI0 331 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 AGPAT5Q9NUQ2 364 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 TTC3P53804 2025 aa14.34□□□□□ -0.11
CCDC42-202ENST00000539522 M0QZ92 97 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ENPP3O14638 875 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 GTPBP6O43824 516 aaPredicted RBP14.33□□□□□ -0.12
CCDC42-202ENST00000539522 MYBP10242 640 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ARF4P18085 180 aaPredicted RBP14.33□□□□□ -0.12
CCDC42-202ENST00000539522 PHKA2P46019 1235 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CDC42EP1Q00587 391 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 PAK2Q13177 524 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 TFDP1Q14186 410 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 FAM187BQ17R55 369 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ODR4Q5SWX8 454 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 SLC39A4Q6P5W5 647 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CHRDL2Q6WN34 429 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 UNC13DQ70J99 1090 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 EPM2AIP1Q7L775 607 aaPredicted RBP14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ZNF720Q7Z2F6 126 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CDR2LQ86X02 465 aaPredicted RBP14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CEP57L1Q8IYX8 460 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ZNF710Q8N1W2 664 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 MYCT1Q8N699 235 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 USP38Q8NB14 1042 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CPB2Q96IY4 423 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 LBHD1Q9BQE6 289 aaPredicted RBP14.33□□□□□ -0.12
CCDC42-202ENST00000539522 PYM1Q9BRP8 204 aaKnown RBP14.33□□□□□ -0.12
CCDC42-202ENST00000539522 HAPLN2Q9GZV7 340 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ST6GALNAC4Q9H4F1 302 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 KMT5AQ9NQR1 393 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 PANK4Q9NVE7 773 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 TBC1D7Q9P0N9 293 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 ZMYM2Q9UBW7 1377 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CDH23Q9H251 3354 aa14.33□□□□□ -0.12
CCDC42-202ENST00000539522 CHD7Q9P2D1 2997 aa14.32□□□□□ -0.12
CCDC42-202ENST00000539522 SZT2Q5T011 3432 aa14.32□□□□□ -0.12
CCDC42-202ENST00000539522 FNDC1Q4ZHG4 1894 aaPredicted RBP14.32□□□□□ -0.12
CCDC42-202ENST00000539522 CCDC169A6NNP5 214 aa14.32□□□□□ -0.12
CCDC42-202ENST00000539522 INO80B-WBP1J3KQ70 363 aa14.32□□□□□ -0.12
CCDC42-202ENST00000539522 FAM13AO94988 1023 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms