RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 LONRF3Q496Y0 759 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 MIER3Q7Z3K6 550 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 MRPL43Q8N983 215 aaKnown RBP17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 AUTS2Q8WXX7 1259 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 RIT2Q99578 217 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 GCOM2Q9BZD3 368 aaPredicted RBP17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 TMEM150BA6NC51 233 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 GALR2O43603 387 aaPredicted RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 SFPQP23246 707 aaKnown RBP eCLIP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 NBL1P41271 181 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 MTHFRP42898 656 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 SSRP1Q08945 709 aaKnown RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 TWF2Q6IBS0 349 aaKnown RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 VPS52Q8N1B4 723 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 TDRD5Q8NAT2 981 aaKnown RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 SLC5A5Q92911 643 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 LPPQ93052 612 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 RIPOR3Q96MK2 946 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 ZBP1Q9H171 429 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 ADAM7Q9H2U9 754 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 NCOA5Q9HCD5 579 aaKnown RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 SORCS3Q9UPU3 1222 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 PIN4Q9Y237 131 aaKnown RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 INPP5FQ9Y2H2 1132 aa17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 TDRD15B5MCY1 1934 aaKnown RBP17.66■□□□□ 0.42
CHMP4A-207ENST00000533523 CDKL5O76039 1030 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 BRD1O95696 1058 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 CXCL14O95715 111 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 PHKA2P46019 1235 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 NLRP5P59047 1200 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 FOXK2Q01167 660 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 TMEM173Q86WV6 379 aaPredicted RBP17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 C12orf76Q8N812 135 aaPredicted RBP17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 TBCKQ8TEA7 893 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 SH2D3AQ9BRG2 576 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 GBP3Q9H0R5 595 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 DZANK1Q9NVP4 752 aa17.65■□□□□ 0.42
CHMP4A-207ENST00000533523 OTOGLQ3ZCN5 2332 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 A0A087WZ62 844 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 SPDYE4A6NLX3 237 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 CD2BP2O95400 341 aaKnown RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 DEXIO95424 95 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 ASGR2P07307 311 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 EPCAMP16422 314 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 DNM2P50570 870 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 RNASELQ05823 741 aaKnown RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 STK3Q13188 491 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 TARBP2Q15633 366 aaKnown RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 XKR3Q5GH77 459 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 GLB1LQ6UWU2 654 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 UBALD2Q8IYN6 164 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 FAM177A1Q8N128 213 aaPredicted RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 RDM1Q8NG50 284 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 SNX21Q969T3 373 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 NLRP4Q96MN2 994 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 FDXACB1Q9BRP7 624 aaPredicted RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 IRF2BPLQ9H1B7 796 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 SLKQ9H2G2 1235 aaPredicted RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 SH3GLB2Q9NR46 395 aa17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 DBR1Q9UK59 544 aaKnown RBP17.64■□□□□ 0.41
CHMP4A-207ENST00000533523 EDIL3O43854 480 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 PSMD10O75832 226 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 TDP2O95551 362 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 USP11P51784 963 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 NOMO2Q5JPE7 1267 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 KIAA1841Q6NSI8 718 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 KANK3Q6NY19 840 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 CATSPER4Q7RTX7 472 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 FRMD5Q7Z6J6 570 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 RHPN2Q8IUC4 686 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 BCL7CQ8WUZ0 217 aaPredicted RBP17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 CHST12Q9NRB3 414 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 TBC1D13Q9NVG8 400 aa17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 SUCLA2Q9P2R7 463 aaPredicted RBP17.63■□□□□ 0.41
CHMP4A-207ENST00000533523 DOCK8Q8NF50 2099 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 MEIS3P2A8K0S8 358 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 PFKFB2O60825 505 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 SKIP12755 728 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 RAB27AP51159 221 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 AK2P54819 239 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 Q4G0T1 1027 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 PLA2G4FQ68DD2 849 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 CABP7Q86V35 215 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 ZNF410Q86VK4 478 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 RSPH1Q8WYR4 309 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 IGSF21Q96ID5 467 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 LARP6Q9BRS8 491 aaKnown RBP17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 NIFKQ9BYG3 293 aaKnown RBP17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 FAM105AQ9NUU6 356 aa17.62■□□□□ 0.41
CHMP4A-207ENST00000533523 TPRP12270 2363 aaKnown RBP17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 CHD6Q8TD26 2715 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 MED19A0JLT2 244 aaPredicted RBP17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 CARNS1A5YM72 827 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 DDX11L8A8MPP1 907 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 CTSAP10619 480 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 POLGP54098 1239 aaPredicted RBP17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 CDC42EP1Q00587 391 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 DDX53Q86TM3 631 aaKnown RBP17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 HSCBQ8IWL3 235 aa17.61■□□□□ 0.41
CHMP4A-207ENST00000533523 CEP89Q96ST8 783 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms