RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 LIG1P18858 919 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 POU3F3P20264 500 aaPredicted RBP16.02■□□□□ 0.16
FOXR1-202ENST00000531539 MBTD1Q05BQ5 628 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 FOXD4L6Q3SYB3 417 aaPredicted RBP16.02■□□□□ 0.16
FOXR1-202ENST00000531539 SPECC1Q5M775 1068 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 HYIQ5T013 277 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 RINT1Q6NUQ1 792 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 FOXD4L3Q6VB84 417 aaPredicted RBP16.02■□□□□ 0.16
FOXR1-202ENST00000531539 ZNF598Q86UK7 904 aaKnown RBP16.02■□□□□ 0.16
FOXR1-202ENST00000531539 IFNLR1Q8IU57 520 aaPredicted RBP16.02■□□□□ 0.16
FOXR1-202ENST00000531539 ABI1Q8IZP0 508 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 RASSF8Q8NHQ8 419 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 BSNDQ8WZ55 320 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 CLP1Q92989 425 aaKnown RBP16.02■□□□□ 0.16
FOXR1-202ENST00000531539 LPPQ93052 612 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 CPB2Q96IY4 423 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 IFT74Q96LB3 600 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 CASD1Q96PB1 797 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 USP28Q96RU2 1077 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 TMEM117Q9H0C3 514 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 CSRNP2Q9H175 543 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 AGPAT5Q9NUQ2 364 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 FAM105AQ9NUU6 356 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 RWDD3Q9Y3V2 267 aa16.02■□□□□ 0.16
FOXR1-202ENST00000531539 TSPAN1O60635 241 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 LINC00271P0C7V0 271 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 PLA2G4BP0C869 781 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 ZSCAN22P10073 491 aaPredicted RBP16.01■□□□□ 0.15
FOXR1-202ENST00000531539 PDIA4P13667 645 aaKnown RBP16.01■□□□□ 0.15
FOXR1-202ENST00000531539 AXLP30530 894 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 DHX8Q14562 1220 aaKnown RBP16.01■□□□□ 0.15
FOXR1-202ENST00000531539 SLC39A14Q15043 492 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 C1orf186Q6ZWK4 172 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 ZBTB8OSQ8IWT0 167 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 KCTD17Q8N5Z5 321 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 DEPTORQ8TB45 409 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 HELQQ8TDG4 1101 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 KIFAP3Q92845 792 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 ZNF396Q96N95 335 aaPredicted RBP16.01■□□□□ 0.15
FOXR1-202ENST00000531539 CLIC6Q96NY7 704 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 RUSC1Q9BVN2 902 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 TRAIPQ9BWF2 469 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 RNF19AQ9NV58 838 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 LMCD1Q9NZU5 365 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 DAXXQ9UER7 740 aaPredicted RBP16.01■□□□□ 0.15
FOXR1-202ENST00000531539 PCDHB2Q9Y5E7 798 aa16.01■□□□□ 0.15
FOXR1-202ENST00000531539 SRPRBQ9Y5M8 271 aaKnown RBP16.01■□□□□ 0.15
FOXR1-202ENST00000531539 CCDC169A6NNP5 214 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 SFI1A8K8P3 1242 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 B4GALT5O43286 388 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 ZNF623O75123 536 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 HIP1RO75146 1068 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 ATF7P17544 494 aaPredicted RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 RAB27AP51159 221 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 RAD51AP2Q09MP3 1159 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 KARSQ15046 597 aaKnown RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 PPP2R5AQ15172 486 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 STK38Q15208 465 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 PCBP1Q15365 356 aaKnown RBP eCLIP16■□□□□ 0.15
FOXR1-202ENST00000531539 SKIV2LQ15477 1246 aaKnown RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 TMEM119Q4V9L6 283 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 UBXN11Q5T124 520 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 USP49Q70CQ1 688 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 SYT2Q8N9I0 419 aaPredicted RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 PGBD4Q96DM1 585 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 EPSTI1Q96J88 318 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 C11orf84Q9BUA3 381 aaPredicted RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 NFKBIZQ9BYH8 718 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 C2orf40Q9H1Z8 148 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 ALG13Q9NP73 1137 aaKnown RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 PRDM6Q9NQX0 595 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 AAASQ9NRG9 546 aa16■□□□□ 0.15
FOXR1-202ENST00000531539 FBXO2Q9UK22 296 aaPredicted RBP16■□□□□ 0.15
FOXR1-202ENST00000531539 C5orf67F2Z3F1 127 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 GRM6O15303 877 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 SLC26A4O43511 780 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 ARF4P18085 180 aaPredicted RBP15.99■□□□□ 0.15
FOXR1-202ENST00000531539 NAMPTP43490 491 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 AMHR2Q16671 573 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 PTPROQ16827 1216 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 TMEM132AQ24JP5 1023 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 CLLU1OSQ5K130 101 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 NOTUMQ6P988 496 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 LRRC55Q6ZSA7 311 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 MRPL10Q7Z7H8 261 aaKnown RBP15.99■□□□□ 0.15
FOXR1-202ENST00000531539 CDR2LQ86X02 465 aaPredicted RBP15.99■□□□□ 0.15
FOXR1-202ENST00000531539 KLHL23Q8NBE8 558 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 PLVAPQ9BX97 442 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 EIF2AQ9BY44 585 aaKnown RBP15.99■□□□□ 0.15
FOXR1-202ENST00000531539 PANK2Q9BZ23 570 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 FZD8Q9H461 694 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 CWH43Q9H720 699 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 PRMT7Q9NVM4 692 aaPredicted RBP15.99■□□□□ 0.15
FOXR1-202ENST00000531539 HCSTQ9UBK5 93 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 PLAGL2Q9UPG8 496 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 USP20Q9Y2K6 914 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 PCDHB12Q9Y5F1 795 aa15.99■□□□□ 0.15
FOXR1-202ENST00000531539 ARID2Q68CP9 1835 aa15.98■□□□□ 0.15
FOXR1-202ENST00000531539 NPHP3-ACAD11A0A0J9YXS1 232 aa15.98■□□□□ 0.15
FOXR1-202ENST00000531539 MEIS3P2A8K0S8 358 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms