RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CNGA1P29973 690 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 ZNF792Q3KQV3 632 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 SLC9C1Q4G0N8 1177 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 GPIHBP1Q8IV16 184 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 ZSWIM2Q8NEG5 633 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 IFT74Q96LB3 600 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 LACRTQ9GZZ8 138 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 KCNG1Q9UIX4 513 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 LGR5O75473 907 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 ZBTB48P10074 688 aaPredicted RBP22.59■■□□□ 1.21
VPS28-209ENST00000528142 KRT13P13646 458 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 ARL2P36404 184 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 VAV2P52735 878 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 RAPGEF1Q13905 1077 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 SPA17Q15506 151 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 HSDL1Q3SXM5 330 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 SLC39A4Q6P5W5 647 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 TAS1R3Q7RTX0 852 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 KIAA1328Q86T90 577 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 SLC35F6Q8N357 371 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 JAKMIP2Q96AA8 810 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 GUCA1BQ9UMX6 200 aa22.59■■□□□ 1.21
VPS28-209ENST00000528142 AKR1B10O60218 316 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 RFC5P40937 340 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 VAMP7P51809 220 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 CCDC122Q5T0U0 273 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 RASAL3Q86YV0 1011 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 ABRAQ8N0Z2 381 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 TMEM143Q96AN5 459 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 DEF6Q9H4E7 631 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 AJAP1Q9UKB5 411 aaPredicted RBP22.58■■□□□ 1.21
VPS28-209ENST00000528142 PCDHA13Q9Y5I0 950 aa22.58■■□□□ 1.21
VPS28-209ENST00000528142 H0YCG3 227 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 RBAK-RBAKDNI3L0D1 243 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 JAM2P57087 298 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 DLG4P78352 724 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 C1orf220Q5T0J3 134 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 PLEKHO2Q8TD55 490 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 ASAP3Q8TDY4 903 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 ERO1AQ96HE7 468 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 KRT86O43790 486 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 GLRA2P23416 452 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 ADORA2AP29274 412 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 ABCD1P33897 745 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 ASIC2Q16515 512 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 BRDTQ58F21 947 aaPredicted RBP22.57■■□□□ 1.2
VPS28-209ENST00000528142 ARMCX2Q7L311 632 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 IRF2BP2Q7Z5L9 587 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 SLC7A3Q8WY07 619 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 AZI2Q9H6S1 392 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 PDGFCQ9NRA1 345 aa22.57■■□□□ 1.2
VPS28-209ENST00000528142 STRNO43815 780 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 TXNP10599 105 aaKnown RBP22.56■■□□□ 1.2
VPS28-209ENST00000528142 TDRD12Q587J7 1177 aaKnown RBP22.56■■□□□ 1.2
VPS28-209ENST00000528142 TMEM63BQ5T3F8 832 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 IQCEQ6IPM2 695 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 PLPPR4Q7Z2D5 763 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 DHX37Q8IY37 1157 aaKnown RBP22.56■■□□□ 1.2
VPS28-209ENST00000528142 LMO3Q8TAP4 145 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 FAM167AQ96KS9 214 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 FBXL18Q96ME1 805 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 SPAG5Q96R06 1193 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 IFIH1Q9BYX4 1025 aaKnown RBP22.56■■□□□ 1.2
VPS28-209ENST00000528142 DIS3Q9Y2L1 958 aaKnown RBP22.56■■□□□ 1.2
VPS28-209ENST00000528142 PPME1Q9Y570 386 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 MRFAP1Q9Y605 127 aa22.56■■□□□ 1.2
VPS28-209ENST00000528142 ADRB2P07550 413 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 NAMPTP43490 491 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 MYL7Q01449 175 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 GFPT1Q06210 699 aaPredicted RBP22.55■■□□□ 1.2
VPS28-209ENST00000528142 PPP3CAQ08209 521 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 TTLL4Q14679 1199 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 GJB7Q6PEY0 223 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 COPS5Q92905 334 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 SPATA33Q96N06 139 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 INTS2Q9H0H0 1204 aaKnown RBP22.55■■□□□ 1.2
VPS28-209ENST00000528142 EMSYQ7Z589 1322 aa22.55■■□□□ 1.2
VPS28-209ENST00000528142 GOLGA8IPA6NC78 632 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 GOLGA8JA6NMD2 632 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 NOP56O00567 594 aaKnown RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 P4HA2O15460 535 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 MAFO75444 373 aaPredicted RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 SCP2P22307 547 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 ZNF157P51786 506 aaPredicted RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 KLHL30Q0D2K2 578 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 NAA30Q147X3 362 aaPredicted RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 CBWD2Q8IUF1 395 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 LRRN4CLQ8ND94 238 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 SCFD2Q8WU76 684 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 BBXQ8WY36 941 aaPredicted RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 TSGA10Q9BZW7 698 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 MYH9P35579 1960 aaKnown RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 CTAGE9A4FU28 777 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 PMM2O15305 246 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 PRKCIP41743 596 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 NCBP1Q09161 790 aaKnown RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 KIF5AQ12840 1032 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 SNRNP35Q16560 246 aaKnown RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 TAPT1Q6NXT6 567 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 EHBP1Q8NDI1 1231 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms