RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SCLT1Q96NL6 688 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 PNMA5Q96PV4 448 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 C11orf84Q9BUA3 381 aaPredicted RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 POLR3FQ9H1D9 316 aaPredicted RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 RNF39Q9H2S5 420 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 UBE2ZQ9H832 354 aaPredicted RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 CD320Q9NPF0 282 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 CHST12Q9NRB3 414 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 FAM105AQ9NUU6 356 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 PIN4Q9Y237 131 aaKnown RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 USP20Q9Y2K6 914 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 GTF3C3Q9Y5Q9 886 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 B4GALT5O43286 388 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 USO1O60763 962 aaKnown RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 OFD1O75665 1012 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 DGAT1O75907 488 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 CSPG5O95196 566 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 EOMESO95936 686 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 RBM10P98175 930 aaKnown RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 ATP2C1P98194 919 aaPredicted RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 CDC42EP1Q00587 391 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 GRIN1Q05586 938 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 POU5F1BQ06416 359 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 SKIV2LQ15477 1246 aaKnown RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 CATSPER4Q7RTX7 472 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 SRGAP1Q7Z6B7 1085 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 DAW1Q8N136 415 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 IL27Q8NEV9 243 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 VN1R2Q8NFZ6 395 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 POF1BQ8WVV4 589 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 HLA-CQ95604 372 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 CPB2Q96IY4 423 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 JPH2Q9BR39 696 aaPredicted RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 VN1R3Q9BXE9 311 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 EIF2AQ9BY44 585 aaKnown RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 CXCL16Q9H2A7 254 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 NSUN3Q9H649 340 aaKnown RBP11.86□□□□□ -0.51
CD44-227ENST00000528086 MIOSQ9NXC5 875 aa11.86□□□□□ -0.51
CD44-227ENST00000528086 E9PMD0 336 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 FSCN2O14926 492 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 ASAP2O43150 1006 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 GAS2O43903 313 aaKnown RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 TBX10O75333 385 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 FGF18O76093 207 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 GLP2RO95838 553 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 ZSCAN20P17040 1043 aaPredicted RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 ARF4P18085 180 aaPredicted RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 CYP11B2P19099 503 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 SFPQP23246 707 aaKnown RBP eCLIP11.85□□□□□ -0.51
CD44-227ENST00000528086 PRPHP41219 470 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 MAPK7Q13164 816 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 PDIA5Q14554 519 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 CDCA2Q69YH5 1023 aaPredicted RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 MCTP1Q6DN14 999 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 TWF2Q6IBS0 349 aaKnown RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 PADI6Q6TGC4 694 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 CDR2LQ86X02 465 aaPredicted RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 RNF169Q8NCN4 708 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 GSTCDQ8NEC7 633 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 ADAMTS19Q8TE59 1207 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 TCP11Q8WWU5 503 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 KHSRPQ92945 711 aaKnown RBP eCLIP11.85□□□□□ -0.51
CD44-227ENST00000528086 NACC1Q96RE7 527 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 NFKBIZQ9BYH8 718 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 LMAN2LQ9H0V9 348 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 UPF2Q9HAU5 1272 aaKnown RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 NOL7Q9UMY1 257 aaKnown RBP11.85□□□□□ -0.51
CD44-227ENST00000528086 COG5Q9UP83 839 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 KIAA1024Q9UPX6 916 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 SMC3Q9UQE7 1217 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 RWDD3Q9Y3V2 267 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 PCDHB2Q9Y5E7 798 aa11.85□□□□□ -0.51
CD44-227ENST00000528086 TDRD15B5MCY1 1934 aaKnown RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 TRIOO75962 3097 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 NT5C1B-RDH14C9J2C7 533 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 H3BQ06 376 aaPredicted RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 DDHD2O94830 711 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 CCT6AP40227 531 aaKnown RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 KCNC3Q14003 757 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 MXD4Q14582 209 aaPredicted RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 TIGD5Q53EQ6 642 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 NAALADL2Q58DX5 795 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 LARP1BQ659C4 914 aaKnown RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 FAM173BQ6P4H8 233 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 KCNT2Q6UVM3 1135 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 ZNF280BQ86YH2 543 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 EXOC8Q8IYI6 725 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 SLC39A11Q8N1S5 342 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 FEZF2Q8TBJ5 459 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 PABPC5Q96DU9 382 aaKnown RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 KIFC3Q9BVG8 833 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 RUSC1Q9BVN2 902 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 CCDC113Q9H0I3 377 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 BHMT2Q9H2M3 363 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 FZD8Q9H461 694 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 NRDE2Q9H7Z3 1164 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 DDX19AQ9NUU7 478 aaKnown RBP11.84□□□□□ -0.51
CD44-227ENST00000528086 TBC1D13Q9NVG8 400 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 DACT1Q9NYF0 836 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 DNAJB4Q9UDY4 337 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms