RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 WWC2-AS2Q96NR7 200 aa6.52□□□□□ -1.37
CD44-223ENST00000526553 OR14A2Q96R54 314 aa6.52□□□□□ -1.37
CD44-223ENST00000526553 UIMC1Q96RL1 719 aa6.52□□□□□ -1.37
CD44-223ENST00000526553 PRSS50Q9UI38 385 aa6.52□□□□□ -1.37
CD44-223ENST00000526553 JAG2Q9Y219 1238 aa6.52□□□□□ -1.37
CD44-223ENST00000526553 TCAF1Q9Y4C2 921 aa6.52□□□□□ -1.37
CD44-223ENST00000526553 TOX4O94842 621 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 JUNP05412 331 aaKnown RBP6.51□□□□□ -1.37
CD44-223ENST00000526553 ZNF20P17024 532 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 COMTP21964 271 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 KIR2DL3P43628 341 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 NRG3P56975 720 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 SAFB2Q14151 953 aaKnown RBP eCLIP6.51□□□□□ -1.37
CD44-223ENST00000526553 HS1BP3Q53T59 392 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 ZNF662Q6ZS27 426 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 GLB1L2Q8IW92 636 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 ANKRD53Q8N9V6 530 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 CDK5RAP1Q96SZ6 601 aaKnown RBP6.51□□□□□ -1.37
CD44-223ENST00000526553 GPHA2Q96T91 129 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 FDXACB1Q9BRP7 624 aaPredicted RBP6.51□□□□□ -1.37
CD44-223ENST00000526553 KLC2Q9H0B6 622 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 KCTD10Q9H3F6 313 aa6.51□□□□□ -1.37
CD44-223ENST00000526553 AGO3Q9H9G7 860 aaKnown RBP6.51□□□□□ -1.37
CD44-223ENST00000526553 PHLDB1Q86UU1 1377 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 A0A1W2PRX2 142 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 K7ESF4 209 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 LY86O95711 162 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 TRIM25Q14258 630 aaKnown RBP6.5□□□□□ -1.37
CD44-223ENST00000526553 UGT8Q16880 541 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 CT83Q5H943 113 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 GAREM2Q75VX8 874 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 NECAB2Q7Z6G3 386 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 ADGRE4PQ86SQ3 457 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 DDX42Q86XP3 938 aaKnown RBP eCLIP6.5□□□□□ -1.37
CD44-223ENST00000526553 PIK3C3Q8NEB9 887 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 LMBR1Q8WVP7 490 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 RAX2Q96IS3 184 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 RPL10LQ96L21 214 aaKnown RBP6.5□□□□□ -1.37
CD44-223ENST00000526553 ORAI2Q96SN7 254 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 DEF6Q9H4E7 631 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 PRDM12Q9H4Q4 367 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 VTA1Q9NP79 307 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 PLA2G3Q9NZ20 509 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 EVLQ9UI08 416 aaPredicted RBP6.5□□□□□ -1.37
CD44-223ENST00000526553 ATP8A1Q9Y2Q0 1164 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 CDY2AQ9Y6F7 541 aa6.5□□□□□ -1.37
CD44-223ENST00000526553 C1QTNF3-AMACRE9PGA6 284 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 PRKD3O94806 890 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 KRTAP10-2P60368 255 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 CD69Q07108 199 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 SPIDRQ14159 915 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 GRM7Q14831 915 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 R3HDM1Q15032 1099 aaKnown RBP6.49□□□□□ -1.37
CD44-223ENST00000526553 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.49□□□□□ -1.37
CD44-223ENST00000526553 KRT40Q6A162 431 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 LMBR1LQ6UX01 489 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 EDAQ92838 391 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 EAF2Q96CJ1 260 aaPredicted RBP6.49□□□□□ -1.37
CD44-223ENST00000526553 AHCYL2Q96HN2 611 aaKnown RBP6.49□□□□□ -1.37
CD44-223ENST00000526553 IL23AQ9NPF7 189 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 TSC22D4Q9Y3Q8 395 aa6.49□□□□□ -1.37
CD44-223ENST00000526553 A0A1W2PR48 441 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 GOLGA8AA7E2F4 631 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 GOLGA8BA8MQT2 603 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 NRP1O14786 923 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 MUSKO15146 869 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 LPLP06858 475 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 CANXP27824 592 aaKnown RBP6.48□□□□□ -1.37
CD44-223ENST00000526553 MSX2P35548 267 aaPredicted RBP6.48□□□□□ -1.37
CD44-223ENST00000526553 LGALS4P56470 323 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 MEF2AQ02078 507 aaPredicted RBP6.48□□□□□ -1.37
CD44-223ENST00000526553 MGAT5Q09328 741 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 FOXL1Q12952 345 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 ACAP1Q15027 740 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 ZNF585AQ6P3V2 769 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 FAM89AQ96GI7 184 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 PAWRQ96IZ0 340 aaKnown RBP6.48□□□□□ -1.37
CD44-223ENST00000526553 MPHOSPH9Q99550 1183 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 C14orf119Q9NWQ9 140 aa6.48□□□□□ -1.37
CD44-223ENST00000526553 ALDH1A2O94788 518 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 ERVK-21P61565 698 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 MRPS9P82933 396 aaKnown RBP6.47□□□□□ -1.37
CD44-223ENST00000526553 CDSNQ15517 529 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 MAMDC4Q6UXC1 1216 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 Q6ZSN1 163 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 TAS1R1Q7RTX1 841 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 CMIPQ8IY22 773 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 CMTM4Q8IZR5 234 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 COG1Q8WTW3 980 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 BORCS6Q96GS4 357 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 TCF25Q9BQ70 676 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 PUS7LQ9H0K6 701 aaKnown RBP6.47□□□□□ -1.37
CD44-223ENST00000526553 RCAN3Q9UKA8 241 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 TESMINQ9Y4I5 508 aa6.47□□□□□ -1.37
CD44-223ENST00000526553 LTA4HP09960 611 aaKnown RBP6.46□□□□□ -1.38
CD44-223ENST00000526553 MTHFD2P13995 350 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 ACO1P21399 889 aaKnown RBP6.46□□□□□ -1.38
CD44-223ENST00000526553 WNT3AP56704 352 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 SCAND1P57086 179 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 AMPD3Q01432 767 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms