RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SPPL3Q8TCT6 385 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 SNX29Q8TEQ0 813 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 NSUN3Q9H649 340 aaKnown RBP23.22■■□□□ 1.31
VPS28-203ENST00000524521 CWH43Q9H720 699 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 GPRC5CQ9NQ84 441 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 FAM105AQ9NUU6 356 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 KIAA1024Q9UPX6 916 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 KIAA1671Q9BY89 1806 aa23.22■■□□□ 1.31
VPS28-203ENST00000524521 INO80B-WBP1J3KQ70 363 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 ERLIN2O94905 339 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 PADI6Q6TGC4 694 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 LRRC55Q6ZSA7 311 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 COLGALT1Q8NBJ5 622 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 MCPH1Q8NEM0 835 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 LPPQ93052 612 aa23.21■■□□□ 1.31
VPS28-203ENST00000524521 PP2D1A8MPX8 630 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 LAG3P18627 525 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 DNAJB1P25685 340 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 CDC25AP30304 524 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 HOXA11P31270 313 aaPredicted RBP23.2■■□□□ 1.3
VPS28-203ENST00000524521 RAB27AP51159 221 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 ATP2C1P98194 919 aaPredicted RBP23.2■■□□□ 1.3
VPS28-203ENST00000524521 NCBP1Q09161 790 aaKnown RBP23.2■■□□□ 1.3
VPS28-203ENST00000524521 KRT79Q5XKE5 535 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 THNSL1Q8IYQ7 743 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 LRRC43Q8N309 656 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 POF1BQ8WVV4 589 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 DDX19AQ9NUU7 478 aaKnown RBP23.2■■□□□ 1.3
VPS28-203ENST00000524521 PCDHB2Q9Y5E7 798 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 UNC80Q8N2C7 3258 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 MYO7AQ13402 2215 aa23.2■■□□□ 1.3
VPS28-203ENST00000524521 VPS37CA5D8V6 355 aaPredicted RBP23.19■■□□□ 1.3
VPS28-203ENST00000524521 ZNF623O75123 536 aa23.19■■□□□ 1.3
VPS28-203ENST00000524521 CYP11B2P19099 503 aa23.19■■□□□ 1.3
VPS28-203ENST00000524521 PDCP20941 246 aa23.19■■□□□ 1.3
VPS28-203ENST00000524521 KCNQ1P51787 676 aa23.19■■□□□ 1.3
VPS28-203ENST00000524521 CAMK1Q14012 370 aa23.19■■□□□ 1.3
VPS28-203ENST00000524521 IFNLR1Q8IU57 520 aaPredicted RBP23.19■■□□□ 1.3
VPS28-203ENST00000524521 BHMT2Q9H2M3 363 aa23.19■■□□□ 1.3
VPS28-203ENST00000524521 UBE2ZQ9H832 354 aaPredicted RBP23.19■■□□□ 1.3
VPS28-203ENST00000524521 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.18■■□□□ 1.3
VPS28-203ENST00000524521 LRRIQ4A6NIV6 560 aa23.18■■□□□ 1.3
VPS28-203ENST00000524521 FGF18O76093 207 aa23.18■■□□□ 1.3
VPS28-203ENST00000524521 PCBP1Q15365 356 aaKnown RBP eCLIP23.18■■□□□ 1.3
VPS28-203ENST00000524521 CSPP1Q1MSJ5 1256 aa23.18■■□□□ 1.3
VPS28-203ENST00000524521 EP400NLQ6ZTU2 488 aa23.18■■□□□ 1.3
VPS28-203ENST00000524521 PGBD4Q96DM1 585 aa23.18■■□□□ 1.3
VPS28-203ENST00000524521 CPB2Q96IY4 423 aa23.18■■□□□ 1.3
VPS28-203ENST00000524521 MEIS3P2A8K0S8 358 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 TSPAN1O60635 241 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 BMP1P13497 986 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 AXLP30530 894 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 MBTD1Q05BQ5 628 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 UBXN11Q5T124 520 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 KCNT2Q6UVM3 1135 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 GLB1LQ6UWU2 654 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 BRAPQ7Z569 592 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 ZNF558Q96NG5 402 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 MRPL9Q9BYD2 267 aaKnown RBP23.17■■□□□ 1.3
VPS28-203ENST00000524521 NFKBIZQ9BYH8 718 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 POLD4Q9HCU8 107 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 FOXD4L1Q9NU39 408 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 DNM3Q9UQ16 869 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 INPP5FQ9Y2H2 1132 aa23.17■■□□□ 1.3
VPS28-203ENST00000524521 A0A0C4DFX4 3053 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 VWA3AA6NCI4 1184 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 E9PMD0 336 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 K7ELQ4 463 aaPredicted RBP23.16■■□□□ 1.3
VPS28-203ENST00000524521 KCNA5P22460 613 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 IRS1P35568 1242 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 PBX3P40426 434 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 ZRSR1Q15695 479 aaKnown RBP23.16■■□□□ 1.3
VPS28-203ENST00000524521 NOTUMQ6P988 496 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 MRPL10Q7Z7H8 261 aaKnown RBP23.16■■□□□ 1.3
VPS28-203ENST00000524521 MICAL1Q8TDZ2 1067 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 MMTAG2Q9BU76 263 aaKnown RBP23.16■■□□□ 1.3
VPS28-203ENST00000524521 IGFLR1Q9H665 355 aa23.16■■□□□ 1.3
VPS28-203ENST00000524521 OFD1O75665 1012 aa23.15■■□□□ 1.3
VPS28-203ENST00000524521 EYA4O95677 639 aa23.15■■□□□ 1.3
VPS28-203ENST00000524521 UBE3AQ05086 875 aa23.15■■□□□ 1.3
VPS28-203ENST00000524521 AMHR2Q16671 573 aa23.15■■□□□ 1.3
VPS28-203ENST00000524521 NOMO2Q5JPE7 1267 aa23.15■■□□□ 1.3
VPS28-203ENST00000524521 ARL6IP4Q66PJ3 421 aaKnown RBP23.15■■□□□ 1.3
VPS28-203ENST00000524521 ADAMTS19Q8TE59 1207 aa23.15■■□□□ 1.3
VPS28-203ENST00000524521 INTS4Q96HW7 963 aaKnown RBP23.15■■□□□ 1.3
VPS28-203ENST00000524521 PLXNA4Q9HCM2 1894 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 ARF4P18085 180 aaPredicted RBP23.14■■□□□ 1.29
VPS28-203ENST00000524521 HYAL1Q12794 435 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 AGMOQ6ZNB7 445 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 ZBTB8OSQ8IWT0 167 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 CNNM3Q8NE01 707 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 RSPH1Q8WYR4 309 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 BSNDQ8WZ55 320 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 PPP2R3CQ969Q6 453 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 PABPC5Q96DU9 382 aaKnown RBP23.14■■□□□ 1.29
VPS28-203ENST00000524521 EIF2AQ9BY44 585 aaKnown RBP23.14■■□□□ 1.29
VPS28-203ENST00000524521 CSRNP2Q9H175 543 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 CLDND1Q9NY35 253 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 SPG21Q9NZD8 308 aa23.14■■□□□ 1.29
VPS28-203ENST00000524521 PUF60Q9UHX1 559 aaKnown RBP23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms