RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	PAFAH1B1	P43034	410 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	VAMP7	P51809	220 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	POLG	P54098	1239 aa	Predicted RBP	11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	PPAT	Q06203	517 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	KCNA1	Q09470	495 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	MAPK7	Q13164	816 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	BMS1	Q14692	1282 aa	Known RBP	11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	SLC18A3	Q16572	532 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	MOB2	Q70IA6	237 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	ERO1B	Q86YB8	467 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	RNF10	Q8N5U6	811 aa	Known RBP	11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	LRRN4CL	Q8ND94	238 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	TAF4B	Q92750	862 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	CAPZA3	Q96KX2	299 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	C17orf75	Q9HAS0	396 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	AIPL1	Q9NZN9	384 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	FBXL5	Q9UKA1	691 aa		11.72	□□□□□ -0.53
SPIDR-222	ENST00000524006	BRCA2	P51587	3418 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ENC1	O14682	589 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	NKRF	O15226	690 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	FANCG	O15287	622 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	PJA2	O43164	708 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	EIF3J	O75822	258 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	PPP1R37	O75864	691 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	GFPT2	O94808	682 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	NOL4	O94818	638 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	SLC25A27	O95847	323 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ATP1A1	P05023	1023 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	SUPT20HL2	P0C7V6	817 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	TRIM49	P0CI25	452 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	TRIM49C	P0CI26	452 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	H2AFX	P16104	143 aa	Predicted RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	KCNA2	P16389	499 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	TCP1	P17987	556 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	SCP2	P22307	547 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ALDH5A1	P51649	535 aa	Predicted RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	NCKAP1L	P55160	1127 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ACTR2	P61160	394 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	STRN3	Q13033	797 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	GPS2	Q13227	327 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	BRD3	Q15059	726 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	MTERF2	Q49AM1	385 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	MAP9	Q49MG5	647 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	WDR78	Q5VTH9	848 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	SWSAP1	Q6NVH7	229 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	SEPT14	Q6ZU15	432 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	RSRC2	Q7L4I2	434 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	TRAPPC11	Q7Z392	1133 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	RIOX2	Q8IUF8	465 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	C12orf56	Q8IXR9	622 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	PURB	Q96QR8	312 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	LACRT	Q9GZZ8	138 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ACBD3	Q9H3P7	528 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ST6GALNAC4	Q9H4F1	302 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	PCIF1	Q9H4Z3	704 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	MLXIP	Q9HAP2	919 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ARFGAP3	Q9NP61	516 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ZNF302	Q9NR11	478 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	SEPT11	Q9NVA2	429 aa	Known RBP	11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	HSPBP1	Q9NZL4	362 aa		11.71	□□□□□ -0.53
SPIDR-222	ENST00000524006	ATP8B3	O60423	1300 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	EMSY	Q7Z589	1322 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	DENND3	A2RUS2	1198 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	SPATA31C2	B4DYI2	1134 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	RBAK-RBAKDN	I3L0D1	243 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	CXCL11	O14625	94 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	HNRNPDL	O14979	420 aa	Known RBP	11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	MAPK13	O15264	365 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	P4HA2	O15460	535 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	SORBS3	O60504	671 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	ATP9A	O75110	1047 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	SOX5	P35711	763 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	MATR3	P43243	847 aa	Known RBP eCLIP	11.7	□□□□□ -0.54	2e-6	■■■■■ 27.8
SPIDR-222	ENST00000524006	NOP2	P46087	812 aa	Known RBP	11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	MXI1	P50539	228 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	CLCN6	P51797	869 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	NPEPPS	P55786	919 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	SOX10	P56693	466 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	FKBP1B	P68106	108 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	PPIL2	Q13356	520 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	KIAA0753	Q2KHM9	967 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	XKR3	Q5GH77	459 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	TREML2	Q5T2D2	321 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	FASTKD5	Q7L8L6	764 aa	Known RBP	11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	DAW1	Q8N136	415 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	KRT222	Q8N1A0	295 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	RDH13	Q8NBN7	331 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	DEPTOR	Q8TB45	409 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	LMBR1	Q8WVP7	490 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	FAM167A	Q96KS9	214 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	SPATC1L	Q9H0A9	340 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	OGFR	Q9NZT2	677 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	APEX2	Q9UBZ4	518 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	PNMA3	Q9UL41	463 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006	TFR2	Q9UP52	801 aa		11.7	□□□□□ -0.54
SPIDR-222	ENST00000524006		A0A0G2JLL6	359 aa	Predicted RBP	11.69	□□□□□ -0.54
SPIDR-222	ENST00000524006		A0A0U1RQG5	324 aa	Predicted RBP	11.69	□□□□□ -0.54
SPIDR-222	ENST00000524006	TMEM150B	A6NC51	233 aa		11.69	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms