RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CDCA2Q69YH5 1023 aaPredicted RBP17.93■□□□□ 0.46
LSM1-204ENST00000522515 SMYD4Q8IYR2 804 aaPredicted RBP17.93■□□□□ 0.46
LSM1-204ENST00000522515 ZNF710Q8N1W2 664 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 CCDC155Q8N6L0 562 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 TMEM40Q8WWA1 233 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 NFKBIZQ9BYH8 718 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 HIPK3Q9H422 1215 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 TMEM39AQ9NV64 488 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 SIP14410 1827 aa17.93■□□□□ 0.46
LSM1-204ENST00000522515 DENND3A2RUS2 1198 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 PITPNM1O00562 1244 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 GCNT3O95395 438 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 ZSCAN23Q3MJ62 389 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 ZNF658Q5TYW1 1059 aaPredicted RBP17.92■□□□□ 0.46
LSM1-204ENST00000522515 IFNLR1Q8IU57 520 aaPredicted RBP17.92■□□□□ 0.46
LSM1-204ENST00000522515 TRIML1Q8N9V2 468 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 STRA6Q9BX79 667 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 GCOM2Q9BZD3 368 aaPredicted RBP17.92■□□□□ 0.46
LSM1-204ENST00000522515 OSBPL7Q9BZF2 842 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 PPP1R12CQ9BZL4 782 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 ST6GALNAC4Q9H4F1 302 aa17.92■□□□□ 0.46
LSM1-204ENST00000522515 PPP1R37O75864 691 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 IQCF3P0C7M6 154 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 DARSP14868 501 aaKnown RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 SELPP16109 830 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 EIF4BP23588 611 aaKnown RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 GTF2BQ00403 316 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 EPM2AIP1Q7L775 607 aaPredicted RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 TAS1R3Q7RTX0 852 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 ZBTB8OSQ8IWT0 167 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 SLC17A8Q8NDX2 589 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 CCDC113Q9H0I3 377 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 GZF1Q9H116 711 aaPredicted RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 C2orf40Q9H1Z8 148 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 MAPK8IP1Q9UQF2 711 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 SYCE3A1L190 88 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 TRIM43BA6NCK2 446 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 INO80B-WBP1J3KQ70 363 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 K7ERI5 159 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 PRPF6O94906 941 aaKnown RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 LETM1O95202 739 aaPredicted RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 CYP2C18P33260 490 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 EFNA5P52803 228 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 MBTD1Q05BQ5 628 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 KCNA1Q09470 495 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 MBTPS1Q14703 1052 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 LRRC8DQ7L1W4 858 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 SRGAP1Q7Z6B7 1085 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 SCFD1Q8WVM8 642 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 TRIM43Q96BQ3 446 aaPredicted RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 INO80BQ9C086 356 aaPredicted RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 TMEM134Q9H6X4 195 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 PRDM5Q9NQX1 630 aaPredicted RBP17.91■□□□□ 0.46
LSM1-204ENST00000522515 PCDHB13Q9Y5F0 798 aa17.91■□□□□ 0.46
LSM1-204ENST00000522515 H0YCG3 227 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 EDN1P05305 212 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 FGFR4P22455 802 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 FBXO47Q5MNV8 452 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 SASS6Q6UVJ0 657 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 ZNF507Q8TCN5 953 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 KCNN1Q92952 543 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 HTATIP2Q9BUP3 242 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 WNT8AQ9H1J5 351 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 FZD8Q9H461 694 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 TBX20Q9UMR3 447 aa17.9■□□□□ 0.46
LSM1-204ENST00000522515 NOC2LQ9Y3T9 749 aaKnown RBP17.9■□□□□ 0.46
LSM1-204ENST00000522515 PHLPP2Q6ZVD8 1323 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 KIAA0355O15063 1070 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 CD44P16070 742 aaKnown RBP17.89■□□□□ 0.45
LSM1-204ENST00000522515 ITGB8P26012 769 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 HOXD13P35453 343 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 PRCPP42785 496 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 CCL23P55773 120 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 NLRP12P59046 1061 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 LPIN1Q14693 890 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 MAPK6Q16659 721 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 IKZF4Q9H2S9 585 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 PCDH10Q9P2E7 1040 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 USP20Q9Y2K6 914 aa17.89■□□□□ 0.45
LSM1-204ENST00000522515 TTLL13PA6NNM8 815 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 EIF3DO15371 548 aaKnown RBP eCLIP17.88■□□□□ 0.45
LSM1-204ENST00000522515 PRKCBP05771 671 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 GHRP10912 638 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 SCP2P22307 547 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 ALCAMQ13740 583 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 GPNMBQ14956 572 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 AMHR2Q16671 573 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 DPCR1Q3MIW9 517 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 L1TD1Q5T7N2 865 aaKnown RBP17.88■□□□□ 0.45
LSM1-204ENST00000522515 STXBP4Q6ZWJ1 553 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 FAM228AQ86W67 206 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 MAP4K3Q8IVH8 894 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 NELFCDQ8IXH7 590 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 C7orf61Q8IZ16 206 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 MYOCDQ8IZQ8 938 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 HVCN1Q96D96 273 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 SCLYQ96I15 445 aa17.88■□□□□ 0.45
LSM1-204ENST00000522515 GTPBP4Q9BZE4 634 aaKnown RBP17.88■□□□□ 0.45
LSM1-204ENST00000522515 AGO3Q9H9G7 860 aaKnown RBP17.88■□□□□ 0.45
LSM1-204ENST00000522515 PPP1R3GB7ZBB8 358 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms