RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CFBP00751 764 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GCP02774 474 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ASLP04424 464 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPLP2P05387 115 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 JUNP05412 331 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ITGB1P05556 798 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM163BP0C2L3 166 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CT47B1P0C2W7 299 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM153BP0C7A2 387 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SETSIPP0DME0 302 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 HKR1P10072 659 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACRP10323 421 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CKBP12277 381 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLS3P13797 630 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC5A1P13866 664 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 HSD3B1P14060 373 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATF2P15336 505 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF28P17035 718 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZSCAN20P17040 1043 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 LAG3P18627 525 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACO1P21399 889 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SDHBP21912 280 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCND1P24385 295 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 APEX1P27695 318 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ECI1P42126 302 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 HALP42357 657 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MCAMP43121 646 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ETV4P43268 484 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCNN1BP51168 640 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEK4P51957 841 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTTG1IPP53801 180 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 AK2P54819 239 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 HERVK_113P62684 666 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT85P78386 507 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ROM1Q03395 351 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLCQ05315 142 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPN11Q06124 597 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 BTKQ06187 659 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAP4K2Q12851 820 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CHAF1AQ13111 956 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX10Q13206 875 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBX2Q13207 712 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 BIRC3Q13489 604 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTMR1Q13613 665 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDE1CQ14123 709 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SIM2Q14190 667 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SAFBQ15424 915 aaKnown RBP eCLIP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDCD2Q16342 344 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPN21Q16825 1174 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 C21orf62-AS1Q17RA5 79 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC96Q2M329 555 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM153CQ494X1 144 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GAGE13Q4V321 117 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 VWA3BQ502W6 1294 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PAN2Q504Q3 1202 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 COBLL1Q53SF7 1204 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC93Q567U6 631 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM133BQ5BKY9 247 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 EMC4Q5J8M3 183 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 METTL24Q5JXM2 366 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM240Q5SV17 173 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANO1Q5XXA6 986 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 LARP1BQ659C4 914 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL31Q6EBC2 164 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPP4R3AQ6IN85 833 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MZT2BQ6NZ67 158 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERAP2Q6P179 960 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CNNM4Q6P4Q7 775 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MZT2AQ6P582 158 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PKN3Q6P5Z2 889 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDXDC1Q6P996 788 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLHDC10Q6PID8 442 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXR2Q6PJQ5 311 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TEPPQ6URK8 271 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 C6orf15Q6UXA7 325 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC81Q6ZN84 652 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MMS22LQ6ZRQ5 1243 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RINLQ6ZS11 566 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBE2R2Q712K3 238 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPATC1Q76KD6 591 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTF1AQ7RTS3 328 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAMDC2Q7Z304 686 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRASPQ7Z6J2 395 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PNPLA5Q7Z6Z6 429 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT77Q7Z794 578 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 STRA8Q7Z7C7 330 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MORC1Q86VD1 984 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRRTM3Q86VH5 581 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF575Q86XF7 245 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPATS2Q86XZ4 545 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIF18BQ86Y91 864 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CPNE8Q86YQ8 564 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MYLK4Q86YV6 388 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM59Q8IWR1 403 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZZZ3Q8IYH5 903 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 COLGALT2Q8IYK4 626 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM186BQ8IYM0 893 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM43AQ8N2R8 423 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 AOPEPQ8N6M6 819 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBR7Q8N806 425 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms