RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 A0A1W2PQ64 194 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 A0A1W2PQD8 194 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 ERLIN2O94905 339 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 SKIP12755 728 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 PLS3P13797 630 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 SCP2P22307 547 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 FGFR4P22455 802 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 SARSP49591 514 aaKnown RBP15.76■□□□□ 0.11
NUP54-216ENST00000514901 SMTNP53814 917 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 FAM189BP81408 668 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 AMPD3Q01432 767 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 MBTD1Q05BQ5 628 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 MAPK7Q13164 816 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 CSPP1Q1MSJ5 1256 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 FAM109BQ6ICB4 259 aaPredicted RBP15.76■□□□□ 0.11
NUP54-216ENST00000514901 DAW1Q8N136 415 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 PDILTQ8N807 584 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 SPIRE2Q8WWL2 714 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 BSNDQ8WZ55 320 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 CHAMP1Q96JM3 812 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 PRIMPOLQ96LW4 560 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 NTPCRQ9BSD7 190 aaKnown RBP15.76■□□□□ 0.11
NUP54-216ENST00000514901 TRAIPQ9BWF2 469 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 MINDY3Q9H8M7 445 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 MAGEF1Q9HAY2 307 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 AGPAT5Q9NUQ2 364 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 PRMT7Q9NVM4 692 aaPredicted RBP15.76■□□□□ 0.11
NUP54-216ENST00000514901 KCNH3Q9ULD8 1083 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 INSL6Q9Y581 213 aa15.76■□□□□ 0.11
NUP54-216ENST00000514901 A0A087X0B3 334 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 CCDC169A6NNP5 214 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 GRXCR1A8MXD5 290 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 C9IYK1 514 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 H0YCG3 227 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 POLR2DO15514 142 aaKnown RBP15.75■□□□□ 0.11
NUP54-216ENST00000514901 TLL1O43897 1013 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 MGEA5O60502 916 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 PEX3P56589 373 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 GIT2Q14161 759 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 E2F4Q16254 413 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 MAPK6Q16659 721 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 FAM187BQ17R55 369 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 PPP4R3CPQ6ZMV5 832 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 NPAS4Q8IUM7 802 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 LINC01599Q8WXQ3 324 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 CCDC51Q96ER9 411 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 PBX4Q9BYU1 374 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 TNMDQ9H2S6 317 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 FZD8Q9H461 694 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 TMEM134Q9H6X4 195 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 ELAC1Q9H777 363 aaKnown RBP15.75■□□□□ 0.11
NUP54-216ENST00000514901 PARVGQ9HBI0 331 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 POLD4Q9HCU8 107 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 USP25Q9UHP3 1055 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 LRFN2Q9ULH4 789 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 PIN4Q9Y237 131 aaKnown RBP15.75■□□□□ 0.11
NUP54-216ENST00000514901 PCDHB7Q9Y5E2 793 aa15.75■□□□□ 0.11
NUP54-216ENST00000514901 TMEM265A0A087WTH1 108 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 A0A0U1RQF3 1178 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 GOLGA6L4A6NEF3 574 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 K7ERI5 159 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 TBCAO75347 108 aaKnown RBP15.74■□□□□ 0.11
NUP54-216ENST00000514901 FAM13AO94988 1023 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 EOMESO95936 686 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 ABCD1P33897 745 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 NPTX2P47972 431 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 FXR1P51114 621 aaKnown RBP eCLIP15.74■□□□□ 0.11
NUP54-216ENST00000514901 ZNF131P52739 623 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 RAD51AP2Q09MP3 1159 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 TWF2Q6IBS0 349 aaKnown RBP15.74■□□□□ 0.11
NUP54-216ENST00000514901 NOTUMQ6P988 496 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 SLC17A8Q8NDX2 589 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 DHX58Q96C10 678 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 TIFAQ96CG3 184 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 REEP2Q9BRK0 252 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 KMT5AQ9NQR1 393 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 MYO9BQ13459 2157 aa15.74■□□□□ 0.11
NUP54-216ENST00000514901 NPHP3-ACAD11A0A0J9YXS1 232 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 FAM237AA0A1B0GTK4 181 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 MYMKA6NI61 221 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 SFI1A8K8P3 1242 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 SOX1O00570 391 aaPredicted RBP15.73■□□□□ 0.11
NUP54-216ENST00000514901 ACKR2O00590 384 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 TSPAN1O60635 241 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 UPP2O95045 317 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 DNAJB2P25686 324 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 HOXA11P31270 313 aaPredicted RBP15.73■□□□□ 0.11
NUP54-216ENST00000514901 RAB27AP51159 221 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 RABGGTBP53611 331 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 HTRA4P83105 476 aaPredicted RBP15.73■□□□□ 0.11
NUP54-216ENST00000514901 CRIPAKQ8N1N5 446 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 MYCT1Q8N699 235 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 DDX12PQ92771 950 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 KCNN1Q92952 543 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 YME1L1Q96TA2 773 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 GDPD2Q9HCC8 539 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 KBTBD4Q9NVX7 518 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 TMEM161AQ9NX61 479 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 ARHGAP28Q9P2N2 729 aa15.73■□□□□ 0.11
NUP54-216ENST00000514901 MYH11P35749 1972 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms