RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 DDX23Q9BUQ8 820 aaKnown RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 LACRTQ9GZZ8 138 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 FAM49AQ9H0Q0 323 aaPredicted RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 SLITRK6Q9H5Y7 841 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 IFT122Q9HBG6 1241 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 HEY1Q9Y5J3 304 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 ADRA2BP18089 450 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 CHRNA3P32297 505 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 KRT76Q01546 638 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 LINC00116Q8NCU8 138 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 SLC30A5Q8TAD4 765 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 ATP6V0A4Q9HBG4 840 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 ESRRAP11474 423 aaPredicted RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 FGFR4P22455 802 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 COL9A3Q14050 684 aaPredicted RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 SLC27A3Q5K4L6 730 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 AGXT2Q9BYV1 514 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 SNX25Q9H3E2 840 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 LRRC4Q9HBW1 653 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 ZNF277Q9NRM2 450 aaPredicted RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 TXLNGQ9NUQ3 528 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 PSMD14O00487 310 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 CASQ2O14958 399 aaPredicted RBP13.55□□□□□ -0.24
USP53-209ENST00000514665 GARSP41250 739 aaKnown RBP13.55□□□□□ -0.24
USP53-209ENST00000514665 SPARCL1Q14515 664 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 RPS6KC1Q96S38 1066 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 JMJD4Q9H9V9 463 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 PLA2G4AP47712 749 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 EPHA7Q15375 998 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 MAPK6Q16659 721 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 MAP3K21Q5TCX8 1036 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 PPP1R2P3Q6NXS1 205 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 SP8Q8IXZ3 490 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 FBXL13Q8NEE6 735 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 WRNIP1Q96S55 665 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 AGPAT1Q99943 283 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 CHORDC1Q9UHD1 332 aaPredicted RBP13.55□□□□□ -0.24
USP53-209ENST00000514665 DCTN4Q9UJW0 460 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 PDS5AQ29RF7 1337 aaKnown RBP13.55□□□□□ -0.24
USP53-209ENST00000514665 CD163L1Q9NR16 1453 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 TAF11Q15544 211 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 C16orf86Q6ZW13 317 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 HVCN1Q96D96 273 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 BCAP29Q9UHQ4 241 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 GGT7Q9UJ14 662 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 FEM1BQ9UK73 627 aa13.55□□□□□ -0.24
USP53-209ENST00000514665 LDHAP00338 332 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 CLTCQ00610 1675 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 TXNRD3Q86VQ6 643 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 SLC35G2Q8TBE7 412 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 NSUN6Q8TEA1 469 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 SPC25Q9HBM1 224 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 TPX2Q9ULW0 747 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 HPCAL4Q9UM19 191 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 FIS1Q9Y3D6 152 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 PLEKHG2Q9H7P9 1386 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 PSMC5P62195 406 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 RNASELQ05823 741 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 GPS1Q13098 491 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 SMAD1Q15797 465 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 MMEL1Q495T6 779 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 ICE2Q659A1 982 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 DPY19L2Q6NUT2 758 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 SRLQ86TD4 932 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 GSDMBQ8TAX9 411 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 N4BP2L2Q92802 583 aaPredicted RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 RBM41Q96IZ5 413 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 PLAGL2Q9UPG8 496 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 SCAF8Q9UPN6 1271 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 KIDINS220Q9ULH0 1771 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 OVOS2A0A0G2JMS6 1433 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 PI4K2BG5E9Z4 385 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 SLC37A4O43826 429 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 FMO5P49326 533 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 MKRN3Q13064 507 aaKnown RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 CDC42EP5Q6NZY7 148 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 EPM2AIP1Q7L775 607 aaPredicted RBP13.54□□□□□ -0.24
USP53-209ENST00000514665 ADGRA1Q86SQ6 560 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 RTKN2Q8IZC4 609 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 HIPK4Q8NE63 616 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 OR6B3Q8NGW1 331 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 NBPF3Q9H094 633 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 SLC5A4Q9NY91 659 aa13.54□□□□□ -0.24
USP53-209ENST00000514665 A0A087X0T9 212 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 FAM187AA6NFU0 413 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CHUKO15111 745 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 MAPK13O15264 365 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 RAD51CO43502 376 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 FAM228BP0C875 321 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 SCP2P22307 547 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CHRNA5P30532 468 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 GNA15P30679 374 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 SEC24CP53992 1094 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 ARL4CP56559 192 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 DBN1Q16643 649 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 ZNF699Q32M78 642 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 EARS2Q5JPH6 523 aaKnown RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 ILDR1Q86SU0 546 aaPredicted RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 FAF2Q96CS3 445 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CHMP6Q96FZ7 201 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms