RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 HEATR3Q7Z4Q2 680 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 SMAP1Q8IYB5 467 aaPredicted RBP13.09□□□□□ -0.31
RNF4-216ENST00000511859 CMTR1Q8N1G2 835 aaKnown RBP13.09□□□□□ -0.31
RNF4-216ENST00000511859 HDAC7Q8WUI4 952 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 BCL7CQ8WUZ0 217 aaPredicted RBP13.09□□□□□ -0.31
RNF4-216ENST00000511859 FAM167AQ96KS9 214 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 MYADMQ96S97 322 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 VN1R3Q9BXE9 311 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 BCO2Q9BYV7 579 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 RIC8AQ9NPQ8 531 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 MAN1C1Q9NR34 630 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 NRBP2Q9NSY0 501 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 TBC1D22BQ9NU19 505 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 PCDHA10Q9Y5I2 948 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 DCDC2BA2VCK2 349 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 POTEMA6NI47 508 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 CCDC69A6NI79 296 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 ANHXE9PGG2 379 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 IPO5O00410 1097 aaKnown RBP13.08□□□□□ -0.31
RNF4-216ENST00000511859 INPPL1O15357 1258 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 ZNF623O75123 536 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 OFD1O75665 1012 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 PAPLNO95428 1278 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 C1RP00736 705 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 ADH1AP07327 375 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 PSAPP07602 524 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 SREBF1P36956 1147 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 MAGEA9P43362 315 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 SLC11A1P49279 550 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 POTEGQ6S5H5 508 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 CASC1Q6TDU7 716 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 CHD1LQ86WJ1 897 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 PLA2G4DQ86XP0 818 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 LRRC71Q8N4P6 559 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 ZBTB44Q8NCP5 570 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 NLRP7Q8WX94 980 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 DOCK6Q96HP0 2047 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 CHAMP1Q96JM3 812 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 SCLT1Q96NL6 688 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 ANO3Q9BYT9 981 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 GCOM2Q9BZD3 368 aaPredicted RBP13.08□□□□□ -0.31
RNF4-216ENST00000511859 OSBPL6Q9BZF3 934 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 GLT8D2Q9H1C3 349 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 IL25Q9H293 177 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 DNAJB4Q9UDY4 337 aa13.08□□□□□ -0.31
RNF4-216ENST00000511859 ZFP37Q9Y6Q3 630 aaPredicted RBP13.08□□□□□ -0.31
RNF4-216ENST00000511859 hCG_1642624A0A1W2PR95 340 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 KANSL1LA0AUZ9 987 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 SSBP05455 408 aaKnown RBP eCLIP13.07□□□□□ -0.32
RNF4-216ENST00000511859 FGFR4P22455 802 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 RAB27AP51159 221 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 AP3B2Q13367 1082 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 TWF2Q6IBS0 349 aaKnown RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 NFXL1Q6ZNB6 911 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 SMC5Q8IY18 1101 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 MB21D2Q8IYB1 491 aaPredicted RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 CCDC82Q8N4S0 544 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 SMG7Q92540 1137 aaKnown RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 LPPQ93052 612 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 PGBD4Q96DM1 585 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 RPS6KC1Q96S38 1066 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 TMEM175Q9BSA9 504 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 FOXQ1Q9C009 403 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 INO80BQ9C086 356 aaPredicted RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 GBP3Q9H0R5 595 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 EPC1Q9H2F5 836 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 SPATA6Q9NWH7 488 aaPredicted RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 ZSCAN32Q9NX65 697 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 KANSL3Q9P2N6 904 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 FAN1Q9Y2M0 1017 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 TBC1D4O60343 1298 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 GLUD1P00367 558 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 SOD2P04179 222 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 URODP06132 367 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 SFPQP23246 707 aaKnown RBP eCLIP13.07□□□□□ -0.32
RNF4-216ENST00000511859 NAPAP54920 295 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 PRKCQQ04759 706 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 CSTF1Q05048 431 aaKnown RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 HTR4Q13639 388 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 B4GALNT3Q6L9W6 998 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 PPP1R18Q6NYC8 613 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 RSPO2Q6UXX9 243 aaPredicted RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 ZNF280BQ86YH2 543 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 URGCPQ8TCY9 931 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 RUFY2Q8WXA3 655 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 PGBD1Q96JS3 809 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 TMEM87BQ96K49 555 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 ZNF668Q96K58 619 aaPredicted RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 FAM193BQ96PV7 902 aaPredicted RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 ZNF577Q9BSK1 485 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 DDX23Q9BUQ8 820 aaKnown RBP13.07□□□□□ -0.32
RNF4-216ENST00000511859 PLEKHA4Q9H4M7 779 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 PIDD1Q9HB75 910 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 FAM105AQ9NUU6 356 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 GABBR1Q9UBS5 961 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 TCEAL9Q9UHQ7 104 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 INPP5FQ9Y2H2 1132 aa13.07□□□□□ -0.32
RNF4-216ENST00000511859 RALGAPA1Q6GYQ0 2036 aa13.06□□□□□ -0.32
RNF4-216ENST00000511859 MYH15Q9Y2K3 1946 aa13.06□□□□□ -0.32
RNF4-216ENST00000511859 FAM86B1E9PN63 330 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms