RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 RNF169Q8NCN4 708 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 MCPH1Q8NEM0 835 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 SNX29Q8TEQ0 813 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 INTS4Q96HW7 963 aaKnown RBP12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 ASB2Q96Q27 587 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 MMTAG2Q9BU76 263 aaKnown RBP12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 COL25A1Q9BXS0 654 aaPredicted RBP12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 NFKBIZQ9BYH8 718 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 ALG13Q9NP73 1137 aaKnown RBP12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 FAM105AQ9NUU6 356 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 COG5Q9UP83 839 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 KIAA1024Q9UPX6 916 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 STK24Q9Y6E0 443 aa12.9□□□□□ -0.34
SH3RF1-205ENST00000511421 K7ELQ4 463 aaPredicted RBP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 DLL1O00548 723 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 DNAJB1P25685 340 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 MRPS5P82675 430 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 MBTD1Q05BQ5 628 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 PCBP1Q15365 356 aaKnown RBP eCLIP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 AMHR2Q16671 573 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 TJAP1Q5JTD0 557 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 UBXN11Q5T124 520 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 BRAPQ7Z569 592 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 COLGALT1Q8NBJ5 622 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 DDX19AQ9NUU7 478 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 ARHGEF35A5YM69 484 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 MEIS3P2A8K0S8 358 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 TSPAN1O60635 241 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 SKIP12755 728 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 PDCP20941 246 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 RAB27AP51159 221 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 TCEAL5Q5H9L2 206 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 KRT79Q5XKE5 535 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 ARL6IP4Q66PJ3 421 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 MRPL10Q7Z7H8 261 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 ABI1Q8IZP0 508 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 LRRC43Q8N309 656 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 HELQQ8TDG4 1101 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 BSNDQ8WZ55 320 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 LPPQ93052 612 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 HLA-CQ95604 372 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 SNX21Q969T3 373 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 BHMT2Q9H2M3 363 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 NSUN3Q9H649 340 aaKnown RBP12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 PCDHB2Q9Y5E7 798 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 PCDHB12Q9Y5F1 795 aa12.89□□□□□ -0.35
SH3RF1-205ENST00000511421 KIAA1671Q9BY89 1806 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 VPS37CA5D8V6 355 aaPredicted RBP12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 INO80B-WBP1J3KQ70 363 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 LAG3P18627 525 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 SYT1P21579 422 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 COL19A1Q14993 1142 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 LONRF3Q496Y0 759 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 SPOUT1Q5T280 376 aaKnown RBP12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 KCNK18Q7Z418 384 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 POF1BQ8WVV4 589 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 AAASQ9NRG9 546 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 XIRP2A4UGR9 3374 aa12.88□□□□□ -0.35
SH3RF1-205ENST00000511421 VWA3AA6NCI4 1184 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 E9PMD0 336 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 OFD1O75665 1012 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 ERLIN2O94905 339 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 EYA4O95677 639 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 AXLP30530 894 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 IRS1P35568 1242 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 HYIQ5T013 277 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 CDCA2Q69YH5 1023 aaPredicted RBP12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 AGMOQ6ZNB7 445 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 CPB2Q96IY4 423 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 PNMA5Q96PV4 448 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 UBE2ZQ9H832 354 aaPredicted RBP12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 POLD4Q9HCU8 107 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 DNM3Q9UQ16 869 aa12.87□□□□□ -0.35
SH3RF1-205ENST00000511421 LRRIQ4A6NIV6 560 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 B4GALT5O43286 388 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 FGF18O76093 207 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 BMP1P13497 986 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 ARF4P18085 180 aaPredicted RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 KCNQ1P51787 676 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 UBE3AQ05086 875 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 RESTQ13127 1097 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 CSPP1Q1MSJ5 1256 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 NOTUMQ6P988 496 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 KCNT2Q6UVM3 1135 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 THNSL1Q8IYQ7 743 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 SMG8Q8ND04 991 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 RSPH1Q8WYR4 309 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 PGBD4Q96DM1 585 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 CCDC51Q96ER9 411 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 EIF2AQ9BY44 585 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 MRPL9Q9BYD2 267 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 FZD8Q9H461 694 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 FOXD4L1Q9NU39 408 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 MTMR6Q9Y217 621 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 CSPG5O95196 566 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 BMP15O95972 392 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 NCLP19338 710 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 PBX3P40426 434 aa12.86□□□□□ -0.35
SH3RF1-205ENST00000511421 PLCB3Q01970 1234 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms