RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CCT4P50991 539 aaKnown RBP5.67□□□□□ -1.5
NUP54-206ENST00000508465 CHRNDQ07001 517 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 CCDC57Q2TAC2 916 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 ALDH1L2Q3SY69 923 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 GNPTABQ3T906 1256 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 TAF7LQ5H9L4 462 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 LDHAL6AQ6ZMR3 332 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 CNTROBQ8N137 903 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 KLHDC4Q8TBB5 520 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 EYA3Q99504 573 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 HAUS7Q99871 368 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 BICC1Q9H694 974 aaKnown RBP5.67□□□□□ -1.5
NUP54-206ENST00000508465 NGRNQ9NPE2 291 aaKnown RBP5.67□□□□□ -1.5
NUP54-206ENST00000508465 GPRC5DQ9NZD1 345 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 DICER1Q9UPY3 1922 aaKnown RBP5.66□□□□□ -1.5
NUP54-206ENST00000508465 C7orf72A4D263 438 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 NPEPPSL1A6NEC2 478 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 H7C1D1 291 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 DDX3XO00571 662 aaKnown RBP eCLIP5.66□□□□□ -1.5
NUP54-206ENST00000508465 VIL1P09327 827 aaKnown RBP5.66□□□□□ -1.5
NUP54-206ENST00000508465 ACVRL1P37023 503 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 KCNJ4P48050 445 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 LRRC24Q50LG9 513 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 TMCO4Q5TGY1 634 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 RUFY4Q6ZNE9 571 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 PNMA8AQ86V59 439 aaPredicted RBP5.66□□□□□ -1.5
NUP54-206ENST00000508465 ZFPM1Q8IX07 1006 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 ANKRD44Q8N8A2 993 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 CRBNQ96SW2 442 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 MENTQ9BUN1 341 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 ANKRD2Q9GZV1 360 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 SLITRK6Q9H5Y7 841 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 CNNM1Q9NRU3 951 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 ADARB2Q9NS39 739 aaKnown RBP5.66□□□□□ -1.5
NUP54-206ENST00000508465 SCAF8Q9UPN6 1271 aaKnown RBP5.66□□□□□ -1.5
NUP54-206ENST00000508465 SIT1Q9Y3P8 196 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 ZNF804BA4D1E1 1349 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 ASTN2O75129 1339 aaPredicted RBP5.66□□□□□ -1.5
NUP54-206ENST00000508465 PTPRCP08575 1304 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 XDHP47989 1333 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 RTL9Q8NET4 1388 aa5.66□□□□□ -1.5
NUP54-206ENST00000508465 TIAM2Q8IVF5 1701 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 C9orf118A6NHY6 69 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 CYP1A1P04798 512 aaPredicted RBP5.65□□□□□ -1.5
NUP54-206ENST00000508465 GRB10Q13322 594 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 MRPL58Q14197 206 aaKnown RBP5.65□□□□□ -1.5
NUP54-206ENST00000508465 CRIP3Q6Q6R5 217 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 USP50Q70EL3 339 aaPredicted RBP5.65□□□□□ -1.5
NUP54-206ENST00000508465 TMEM87AQ8NBN3 555 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 MEIS3Q99687 375 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 GLIS2Q9BZE0 524 aaPredicted RBP5.65□□□□□ -1.5
NUP54-206ENST00000508465 API5Q9BZZ5 524 aaKnown RBP5.65□□□□□ -1.5
NUP54-206ENST00000508465 KLHL25Q9H0H3 589 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 DEF6Q9H4E7 631 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 RIPOR2Q9Y4F9 1068 aa5.65□□□□□ -1.5
NUP54-206ENST00000508465 UTYO14607 1347 aa5.65□□□□□ -1.51
NUP54-206ENST00000508465 WDR90Q96KV7 1748 aa5.65□□□□□ -1.51
NUP54-206ENST00000508465 DUOX1Q9NRD9 1551 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 IPO8O15397 1037 aaKnown RBP5.64□□□□□ -1.51
NUP54-206ENST00000508465 SLPIP03973 132 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 CT47B1P0C2W7 299 aaPredicted RBP5.64□□□□□ -1.51
NUP54-206ENST00000508465 UBTFL1P0CB47 393 aaPredicted RBP5.64□□□□□ -1.51
NUP54-206ENST00000508465 GYG1P46976 350 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 SLC7A5Q01650 507 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 METTL24Q5JXM2 366 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 PRAMEF18Q5VWM3 479 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 CST9Q5W186 159 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 TTLL5Q6EMB2 1281 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 STK32CQ86UX6 486 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 MIB1Q86YT6 1006 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 Q8N1X5 172 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 ARHGEF39Q8N4T4 335 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 FAM26EQ8N5C1 309 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 SEC14L1Q92503 715 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 DPF2Q92785 391 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 RCC1LQ96I51 464 aaKnown RBP5.64□□□□□ -1.51
NUP54-206ENST00000508465 GMLQ99445 158 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 KLC2Q9H0B6 622 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 SIL1Q9H173 461 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 VPS11Q9H270 941 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 ZNF408Q9H9D4 720 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 MARCH2Q9P0N8 246 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 CGGBP1Q9UFW8 167 aaPredicted RBP5.64□□□□□ -1.51
NUP54-206ENST00000508465 PPT2Q9UMR5 302 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 SUGT1Q9Y2Z0 365 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 LRRFIP2Q9Y608 721 aaKnown RBP5.64□□□□□ -1.51
NUP54-206ENST00000508465 CACNA1FO60840 1977 aa5.64□□□□□ -1.51
NUP54-206ENST00000508465 TRIM27P14373 513 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 RFX5P48382 616 aaPredicted RBP5.63□□□□□ -1.51
NUP54-206ENST00000508465 ITGA1P56199 1179 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 GRM1Q13255 1194 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 RABL6Q3YEC7 729 aaPredicted RBP5.63□□□□□ -1.51
NUP54-206ENST00000508465 PRR31Q5SQ13 230 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 DACT2Q5SW24 774 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 ATF7IPQ6VMQ6 1270 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 CIR1Q86X95 450 aaPredicted RBP5.63□□□□□ -1.51
NUP54-206ENST00000508465 TMEM57Q8N5G2 664 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 PLEKHO2Q8TD55 490 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 ARHGAP45Q92619 1136 aa5.63□□□□□ -1.51
NUP54-206ENST00000508465 FAM84BQ96KN1 310 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms