RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 NEMFO60524 1076 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 EOMESO95936 686 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 LTBRP36941 435 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 NRIP1P48552 1158 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 NDUFV1P49821 464 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 KRT85P78386 507 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 XKR9Q5GH70 373 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 TWF2Q6IBS0 349 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 GJD3Q8N144 294 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 ZNF579Q8NAF0 562 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 PSPC1Q8WXF1 523 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 PUF60Q9UHX1 559 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 LINC01565O15544 149 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 ATP2B1P20020 1258 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 TXKP42681 527 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 DLX2Q07687 328 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 SPIRE1Q08AE8 756 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 ADAM15Q13444 863 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 ADGRD2Q7Z7M1 963 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 HELQQ8TDG4 1101 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 TMEM143Q96AN5 459 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 CCDC43Q96MW1 224 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 ZNF396Q96N95 335 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 EIF2AK1Q9BQI3 630 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 DHX33Q9H6R0 707 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 TTC12Q9H892 705 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 RNF19AQ9NV58 838 aa20.05■□□□□ 0.8
SQSTM1-209ENST00000504627 GAS2O43903 313 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 SRGAP2CP0DJJ0 459 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 SKIP12755 728 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 PHKA2P46019 1235 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 KRT17Q04695 432 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 DNM1Q05193 864 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 CLLU1OSQ5K130 101 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 KCNT2Q6UVM3 1135 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 LRRC55Q6ZSA7 311 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 ZNF598Q86UK7 904 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 TCP11Q8WWU5 503 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 PRPF31Q8WWY3 499 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 ZNF558Q96NG5 402 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 MRPL9Q9BYD2 267 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 EPHX3Q9H6B9 360 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 TLE6Q9H808 572 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 CD320Q9NPF0 282 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 PCDHGC5Q9Y5F6 944 aa20.04■□□□□ 0.8
SQSTM1-209ENST00000504627 ZBTB39O15060 712 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 SLITRK3O94933 977 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 PTMSP20962 102 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 MCM4P33991 863 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 PPM1AP35813 382 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 EMC2Q15006 297 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 LONRF3Q496Y0 759 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 PDE12Q6L8Q7 609 aaKnown RBP20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 SRGAP1Q7Z6B7 1085 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 EFHBQ8N7U6 833 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 TMEM87AQ8NBN3 555 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 MRPS27Q92552 414 aaKnown RBP20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 MTRQ99707 1265 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 CD207Q9UJ71 328 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 CFAP45Q9UL16 551 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 ATG2AQ2TAZ0 1938 aa20.03■□□□□ 0.8
SQSTM1-209ENST00000504627 ASAP2O43150 1006 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 TBX10O75333 385 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 ATF7P17544 494 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 PBX3P40426 434 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 RAB27AP51159 221 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 ERVFC1P60507 584 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 PLCB3Q01970 1234 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 LAMTOR4Q0VGL1 99 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 NFKBIBQ15653 356 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 FOXD4L6Q3SYB3 417 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 RILPL1Q5EBL4 403 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 FAM173BQ6P4H8 233 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 FOXD4L3Q6VB84 417 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 TRAIPQ9BWF2 469 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 SCAND2PQ9GZW5 306 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 IFT122Q9HBG6 1241 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 ENTPD7Q9NQZ7 604 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 FAM105AQ9NUU6 356 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 SPG21Q9NZD8 308 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 PRKAG3Q9UGI9 489 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 LZTS1Q9Y250 596 aa20.02■□□□□ 0.8
SQSTM1-209ENST00000504627 WNT7AO00755 349 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 PER2O15055 1255 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 MBTPS2O43462 519 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 NCLP19338 710 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 COL9A1P20849 921 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 MCM7P33993 719 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 TRAPPC10P48553 1259 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 ALDH7A1P49419 539 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 SMAD4Q13485 552 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 PLPP4Q5VZY2 271 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 RNF149Q8NC42 400 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 RSPH1Q8WYR4 309 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 LPPQ93052 612 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 HSD17B14Q9BPX1 270 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 TCF25Q9BQ70 676 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 NOL7Q9UMY1 257 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 PLXNA4Q9HCM2 1894 aa20.01■□□□□ 0.79
SQSTM1-209ENST00000504627 FSD2A1L4K1 749 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms