RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 RIPOR2Q9Y4F9 1068 aa5.15□□□□□ -1.59
USP54-217ENST00000498213 TIMM13Q9Y5L4 95 aaPredicted RBP5.15□□□□□ -1.59
USP54-217ENST00000498213 RIC1Q4ADV7 1423 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 OTOL1A6NHN0 477 aaPredicted RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 IGFBP6P24592 240 aaPredicted RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 MC3RP41968 323 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 MRPS5P82675 430 aaKnown RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 NHLH1Q02575 133 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 EIF4A2Q14240 407 aaKnown RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 SKOR2Q2VWA4 1001 aaPredicted RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 ERICH6BQ5W0A0 696 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 MBLAC2Q68D91 279 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 MRM1Q6IN84 353 aaKnown RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 NECAB2Q7Z6G3 386 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 PRRT2Q7Z6L0 340 aaPredicted RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 LINC01356Q8N9X3 169 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 NPLOC4Q8TAT6 608 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 MICAL1Q8TDZ2 1067 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 FRS2Q8WU20 508 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 TRMT2BQ96GJ1 504 aaKnown RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 TMEM169Q96HH4 297 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 YIPF4Q9BSR8 244 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 EPB41L4AQ9HCS5 686 aaPredicted RBP5.14□□□□□ -1.59
USP54-217ENST00000498213 ZNF652Q9Y2D9 606 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 RTL9Q8NET4 1388 aa5.14□□□□□ -1.59
USP54-217ENST00000498213 CDH23Q9H251 3354 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 SMIM22K7EJ46 135 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 U2SURPO15042 1029 aaKnown RBP5.13□□□□□ -1.59
USP54-217ENST00000498213 PPP1R11O60927 126 aaPredicted RBP5.13□□□□□ -1.59
USP54-217ENST00000498213 STK10O94804 968 aaKnown RBP5.13□□□□□ -1.59
USP54-217ENST00000498213 CELA3BP08861 270 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 CTGFP29279 349 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 UBXN2AP68543 259 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 LACTBP83111 547 aaPredicted RBP5.13□□□□□ -1.59
USP54-217ENST00000498213 HLFQ16534 295 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 DDR2Q16832 855 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 INF2Q27J81 1249 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 PRSS53Q2L4Q9 553 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 SLC10A6Q3KNW5 377 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 MROH9Q5TGP6 573 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 CLEC4GQ6UXB4 293 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 CEP68Q76N32 757 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 TTC5Q8N0Z6 440 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 SEC14L1Q92503 715 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 ZNF496Q96IT1 587 aaPredicted RBP5.13□□□□□ -1.59
USP54-217ENST00000498213 UIMC1Q96RL1 719 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 THEGQ9P2T0 379 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 PLA2G2DQ9UNK4 145 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 SIT1Q9Y3P8 196 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 KIF7Q2M1P5 1343 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 KIF20BQ96Q89 1820 aa5.13□□□□□ -1.59
USP54-217ENST00000498213 ECE2O60344 883 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 ZBTB48P10074 688 aaPredicted RBP5.12□□□□□ -1.59
USP54-217ENST00000498213 CYP2C8P10632 490 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 ATF2P15336 505 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 FPR2P25090 351 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 LTBRP36941 435 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 BCL6P41182 706 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 GFRA1P56159 465 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 KRTAP10-2P60368 255 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 ACBD5Q5T8D3 534 aaPredicted RBP5.12□□□□□ -1.59
USP54-217ENST00000498213 ETV3LQ6ZN32 361 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 B3GNT8Q7Z7M8 397 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 ZC3H18Q86VM9 953 aaKnown RBP5.12□□□□□ -1.59
USP54-217ENST00000498213 CKAP2LQ8IYA6 745 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 ZDHHC14Q8IZN3 488 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 CELF2-AS1Q8N7Q2 184 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 TMEM145Q8NBT3 493 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 SMARCC2Q8TAQ2 1214 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 FEZF2Q8TBJ5 459 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 PLEKHO2Q8TD55 490 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 KCTD13Q8WZ19 329 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 MYOZ2Q9NPC6 264 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 SRRDQ9UH36 339 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 KNSTRNQ9Y448 316 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 PCDHA2Q9Y5H9 948 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 SCN7AQ01118 1682 aa5.12□□□□□ -1.59
USP54-217ENST00000498213 RNMTO43148 476 aaKnown RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 SMARCA5O60264 1052 aaPredicted RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 SCG5P05408 212 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 GPTP24298 496 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 PSMC4P43686 418 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 KCNC1P48547 511 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 PRMT2P55345 433 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 ZNF280AP59817 542 aaPredicted RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 PPP2R2AP63151 447 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 CACNB2Q08289 660 aaPredicted RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 HSP90AA2PQ14568 343 aaPredicted RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 SF1Q15637 639 aaKnown RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 GGNQ86UU5 652 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 FAM43AQ8N2R8 423 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 FNIP1Q8TF40 1166 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 CPA5Q8WXQ8 436 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 BRI3BPQ8WY22 251 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 GMLQ99445 158 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 IER2Q9BTL4 223 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 KRTAP9-8Q9BYQ0 159 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 LUC7LQ9NQ29 371 aaKnown RBP5.11□□□□□ -1.59
USP54-217ENST00000498213 USP40Q9NVE5 1235 aa5.11□□□□□ -1.59
USP54-217ENST00000498213 ABCC4O15439 1325 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms