RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 DPYDQ12882 1025 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 COASYQ13057 564 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 GPNMBQ14956 572 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 CHRDL2Q6WN34 429 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 TSHZ1Q6ZSZ6 1077 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 FAM178BQ8IXR5 827 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 ZNF710Q8N1W2 664 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 C2orf40Q9H1Z8 148 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 C17orf75Q9HAS0 396 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 HOOK1Q9UJC3 728 aaKnown RBP13.13□□□□□ -0.31
CUX1-210ENST00000497815 TANC1Q9C0D5 1861 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 FRMD3A2A2Y4 597 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 PARNO95453 639 aaKnown RBP13.12□□□□□ -0.31
CUX1-210ENST00000497815 MBD3O95983 291 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 MYL1P05976 194 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 SFPQP23246 707 aaKnown RBP eCLIP13.12□□□□□ -0.311e-6■■■■□ 20.4
CUX1-210ENST00000497815 RFC2P35250 354 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 MBTD1Q05BQ5 628 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 PPIGQ13427 754 aaKnown RBP eCLIP13.12□□□□□ -0.312e-7■■■□□ 16.3
CUX1-210ENST00000497815 KMT5BQ4FZB7 885 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 CDCA2Q69YH5 1023 aaPredicted RBP13.12□□□□□ -0.31
CUX1-210ENST00000497815 CNNM4Q6P4Q7 775 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 UNC13DQ70J99 1090 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 CATSPER4Q7RTX7 472 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 SRGAP1Q7Z6B7 1085 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 FAM228AQ86W67 206 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 SPIRE2Q8WWL2 714 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 IFIH1Q9BYX4 1025 aaKnown RBP13.12□□□□□ -0.31
CUX1-210ENST00000497815 MRPL44Q9H9J2 332 aaKnown RBP13.12□□□□□ -0.31
CUX1-210ENST00000497815 EXOC1Q9NV70 894 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 PADI3Q9ULW8 664 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 ST3GAL5Q9UNP4 418 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 USP20Q9Y2K6 914 aa13.12□□□□□ -0.31
CUX1-210ENST00000497815 SIP14410 1827 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 PVALEFA0A1B0GWK0 134 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 DENND3A2RUS2 1198 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 K7ERI5 159 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 KLRC4O43908 158 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 ERLIN2O94905 339 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 SMC2O95347 1197 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 GCNT3O95395 438 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 MAGEA10P43363 369 aaPredicted RBP13.11□□□□□ -0.31
CUX1-210ENST00000497815 EFNA5P52803 228 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 EPHB4P54760 987 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 NCKAP1LP55160 1127 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 POU5F1BQ06416 359 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 TMEM132AQ24JP5 1023 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 TCTN1Q2MV58 587 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 ZC2HC1CQ53FD0 456 aaPredicted RBP13.11□□□□□ -0.31
CUX1-210ENST00000497815 PLEKHG4Q58EX7 1191 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 HAUS6Q7Z4H7 955 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 RPUSD2Q8IZ73 545 aaKnown RBP13.11□□□□□ -0.31
CUX1-210ENST00000497815 USP38Q8NB14 1042 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 TMEM161BQ8NDZ6 487 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 DBF4BQ8NFT6 615 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 SEPT8Q92599 483 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 SMARCE1Q969G3 411 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 CCDC47Q96A33 483 aaKnown RBP13.11□□□□□ -0.31
CUX1-210ENST00000497815 NTPCRQ9BSD7 190 aaKnown RBP13.11□□□□□ -0.31
CUX1-210ENST00000497815 NFKBIZQ9BYH8 718 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 FGFBP2Q9BYJ0 223 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 CLSTN2Q9H4D0 955 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 ERVK-5Q9HDB9 667 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 IL23AQ9NPF7 189 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 ARHGAP28Q9P2N2 729 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 SEL1LQ9UBV2 794 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 KCNG1Q9UIX4 513 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 LTBP2Q14767 1821 aa13.11□□□□□ -0.31
CUX1-210ENST00000497815 GPR182O15218 404 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 B4GALT5O43286 388 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 TSPAN1O60635 241 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 CXCL10P02778 98 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 PRKCBP05771 671 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 MYBP10242 640 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 MAPTP10636 758 aaKnown RBP13.1□□□□□ -0.31
CUX1-210ENST00000497815 IBSPP21815 317 aaPredicted RBP13.1□□□□□ -0.31
CUX1-210ENST00000497815 CASP5P51878 434 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 STRN3Q13033 797 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 MAPK6Q16659 721 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 FAM26FQ5R3K3 315 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 ISM2Q6H9L7 571 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 C16orf59Q7L2K0 433 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 IFNLR1Q8IU57 520 aaPredicted RBP13.1□□□□□ -0.31
CUX1-210ENST00000497815 GLIS3Q8NEA6 775 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 VWCEQ96DN2 955 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 FIZ1Q96SL8 496 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 CCDC113Q9H0I3 377 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 NUP62CLQ9H1M0 184 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 SLC39A2Q9NP94 309 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 PIN4Q9Y237 131 aaKnown RBP13.1□□□□□ -0.31
CUX1-210ENST00000497815 PCDHA5Q9Y5H7 936 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 SQORQ9Y6N5 450 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 PHLPP2Q6ZVD8 1323 aa13.1□□□□□ -0.31
CUX1-210ENST00000497815 TTLL13PA6NNM8 815 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 H0YCG3 227 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 EDN1P05305 212 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 PTMSP20962 102 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 PRPF4BQ13523 1007 aaKnown RBP13.09□□□□□ -0.31
CUX1-210ENST00000497815 SCN5AQ14524 2016 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 AMHR2Q16671 573 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms