RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PDCD1Q15116 288 aa7.96□□□□□ -1.14
SF3B1-212ENST00000496458 GAGE13Q4V321 117 aa7.96□□□□□ -1.14
SF3B1-212ENST00000496458 Q6ZSN1 163 aa7.96□□□□□ -1.14
SF3B1-212ENST00000496458 GAREM2Q75VX8 874 aa7.96□□□□□ -1.14
SF3B1-212ENST00000496458 KRT26Q7Z3Y9 468 aa7.96□□□□□ -1.14
SF3B1-212ENST00000496458 SH3RF3Q8TEJ3 882 aaPredicted RBP7.96□□□□□ -1.14
SF3B1-212ENST00000496458 C1QTNF3-AMACRE9PGA6 284 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 GAAP10253 952 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 TMPRSS15P98073 1019 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 STAT4Q14765 748 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 PRKD1Q15139 912 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-212ENST00000496458 CT83Q5H943 113 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 SPDYAQ5MJ70 313 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 ADGRE4PQ86SQ3 457 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 D2HGDHQ8N465 521 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 ZNF808Q8N4W9 903 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-212ENST00000496458 PIK3C3Q8NEB9 887 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 FAM89AQ96GI7 184 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 FDXACB1Q9BRP7 624 aaPredicted RBP7.95□□□□□ -1.14
SF3B1-212ENST00000496458 WNT8AQ9H1J5 351 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 IL23AQ9NPF7 189 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 NCDNQ9UBB6 729 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 RCAN3Q9UKA8 241 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 TMPRSS11EQ9UL52 423 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 MYRFQ9Y2G1 1151 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 NUMBLQ9Y6R0 609 aa7.95□□□□□ -1.14
SF3B1-212ENST00000496458 SEC24DO94855 1032 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-212ENST00000496458 JUNP05412 331 aaKnown RBP7.94□□□□□ -1.14
SF3B1-212ENST00000496458 LPLP06858 475 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 XPAP23025 273 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-212ENST00000496458 KIR2DL3P43628 341 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 CD69Q07108 199 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 TRIM25Q14258 630 aaKnown RBP7.94□□□□□ -1.14
SF3B1-212ENST00000496458 PITRM1Q5JRX3 1037 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 SPRED1Q7Z699 444 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 UNC5BQ8IZJ1 945 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 PPP1R14CQ8TAE6 165 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 EDAQ92838 391 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 PRDM12Q9H4Q4 367 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 PRSS50Q9UI38 385 aa7.94□□□□□ -1.14
SF3B1-212ENST00000496458 UBE2QL1A1L167 161 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 NRP2O60462 931 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 EYA4O95677 639 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 LY86O95711 162 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 CPEP16870 476 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 GPR15P49685 360 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 MGAT5Q09328 741 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 LCE5AQ5TCM9 118 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 IQSEC1Q6DN90 963 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 MAMDC4Q6UXC1 1216 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 LHFPL2Q6ZUX7 228 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 LYSMD2Q8IV50 215 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 FAM126AQ9BYI3 521 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-212ENST00000496458 KCTD10Q9H3F6 313 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 TLR9Q9NR96 1032 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 EVLQ9UI08 416 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-212ENST00000496458 TESMINQ9Y4I5 508 aa7.93□□□□□ -1.14
SF3B1-212ENST00000496458 NRG3P56975 720 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 HHEXQ03014 270 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 CCDC178Q5BJE1 867 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 LMBR1LQ6UX01 489 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 SGMS1Q86VZ5 419 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 OR14C36Q8NHC7 312 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 TCF25Q9BQ70 676 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 VTA1Q9NP79 307 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 ING3Q9NXR8 418 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 SH3BP1Q9Y3L3 701 aa7.92□□□□□ -1.14
SF3B1-212ENST00000496458 CAPN14A8MX76 684 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 MATN3O15232 486 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 MTSS1O43312 755 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 ALDH1A2O94788 518 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 UGT8Q16880 541 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 FAM111BQ6SJ93 734 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 SLC41A1Q8IVJ1 513 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 GLB1L2Q8IW92 636 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 WDR66Q8TBY9 1149 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 RSAD2Q8WXG1 361 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 EAF2Q96CJ1 260 aaPredicted RBP7.91□□□□□ -1.14
SF3B1-212ENST00000496458 ACAP3Q96P50 834 aa7.91□□□□□ -1.14
SF3B1-212ENST00000496458 HIBADHP31937 336 aaKnown RBP7.9□□□□□ -1.14
SF3B1-212ENST00000496458 LGALS4P56470 323 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 FSCN1Q16658 493 aaKnown RBP7.9□□□□□ -1.14
SF3B1-212ENST00000496458 CMIPQ8IY22 773 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 CMTM4Q8IZR5 234 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 ATL2Q8NHH9 583 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 ARL8AQ96BM9 186 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 MPHOSPH9Q99550 1183 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 TMX1Q9H3N1 280 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 EDARQ9UNE0 448 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 CDY2AQ9Y6F7 541 aa7.9□□□□□ -1.14
SF3B1-212ENST00000496458 GPR39O43194 453 aa7.89□□□□□ -1.15
SF3B1-212ENST00000496458 TNFRSF1AP19438 455 aa7.89□□□□□ -1.15
SF3B1-212ENST00000496458 POU3F3P20264 500 aaPredicted RBP7.89□□□□□ -1.15
SF3B1-212ENST00000496458 ENPP1P22413 925 aa7.89□□□□□ -1.15
SF3B1-212ENST00000496458 NPEPPSP55786 919 aa7.89□□□□□ -1.15
SF3B1-212ENST00000496458 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.89□□□□□ -1.15
SF3B1-212ENST00000496458 SPATS2Q86XZ4 545 aaKnown RBP7.89□□□□□ -1.15
SF3B1-212ENST00000496458 TGFBRAP1Q8WUH2 860 aa7.89□□□□□ -1.15
SF3B1-212ENST00000496458 SPC25Q9HBM1 224 aa7.89□□□□□ -1.15
SF3B1-212ENST00000496458 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms