RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GOLGA8JA6NMD2 632 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 GALCP54803 685 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 UAP1Q16222 522 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 PEX26Q7Z412 305 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 NLRP14Q86W24 1093 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 TPCN2Q8NHX9 752 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 CLEC4DQ8WXI8 215 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 TAAR1Q96RJ0 339 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 GPR88Q9GZN0 384 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 INTS2Q9H0H0 1204 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 TSKSQ9UJT2 592 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 ATP8A1Q9Y2Q0 1164 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 NOC2LQ9Y3T9 749 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 GOLGA6L10A6NI86 522 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 PPP1R12BO60237 982 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 H2AFZP0C0S5 128 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 PTGER2P43116 358 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 ZNF131P52739 623 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 PLA2G4FQ68DD2 849 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 H2AFVQ71UI9 128 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 FAM160B2Q86V87 743 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 LRRC57Q8N9N7 239 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 OLIG1Q8TAK6 271 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 KIFC3Q9BVG8 833 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 EHMT1Q9H9B1 1298 aa17.91■□□□□ 0.46
CCDC88B-210ENST00000494566 PHF20L1A8MW92 1017 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 ATP9AO75110 1047 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 PRKCIP41743 596 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 STAT1P42224 750 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 MYL7Q01449 175 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 PHLDB3Q6NSJ2 640 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 B3GNT9Q6UX72 402 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 NIM1KQ8IY84 436 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 CAVIN3Q969G5 261 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 FAM84AQ96KN4 292 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 ATP6V1G3Q96LB4 118 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 CNOT8Q9UFF9 292 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 GGT7Q9UJ14 662 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 COL2A1P02458 1487 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 PPP1R37O75864 691 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 ICAM1P05362 532 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 ASNSP08243 561 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 SOX5P35711 763 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 GCLMP48507 274 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 NPEPPSP55786 919 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 SOX10P56693 466 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 SF3B2Q13435 895 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 PRAMEF18Q5VWM3 479 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 MMS22LQ6ZRQ5 1243 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 DEFB132Q7Z7B7 95 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 RTKN2Q8IZC4 609 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 GLG1Q92896 1179 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 ACP6Q9NPH0 428 aa17.9■□□□□ 0.46
CCDC88B-210ENST00000494566 DHX15O43143 795 aaKnown RBP17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 SETQ01105 290 aaPredicted RBP17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 PTGISQ16647 500 aa17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 TKFCQ3LXA3 575 aa17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 SLC20A1Q8WUM9 679 aa17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 KAT5Q92993 513 aa17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 CCDC113Q9H0I3 377 aa17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 TMOD4Q9NZQ9 345 aa17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 BZW2Q9Y6E2 419 aaKnown RBP17.89■□□□□ 0.46
CCDC88B-210ENST00000494566 EMSYQ7Z589 1322 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 SLCO1A2P46721 670 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 HSD17B4P51659 736 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 TNNC1P63316 161 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 SP4Q02446 784 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 BFSP1Q12934 665 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 ZNF746Q6NUN9 644 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 NSMFQ6X4W1 530 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 MYCBPAPQ8TBZ2 947 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 ARHGEF26Q96DR7 871 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 CAMKK2Q96RR4 588 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 ZNRF3Q9ULT6 936 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 TELO2Q9Y4R8 837 aa17.89■□□□□ 0.45
CCDC88B-210ENST00000494566 FOXN3O00409 490 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MYZAPP0CAP1 466 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 USP8P40818 1118 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MDH1P40925 334 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MAGOHP61326 146 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 RPS6P62753 249 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 PPP3CAQ08209 521 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 KRT71Q3SY84 523 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 ARHGEF19Q8IW93 802 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MAGOHBQ96A72 148 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MYOZ2Q9NPC6 264 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 DMAC2Q9NW81 257 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 PPP1R1BQ9UD71 204 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 PGAP2Q9UHJ9 254 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 TNS1Q9HBL0 1735 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 SLC16A4O15374 487 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 ECM2O94769 699 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 FGGP02679 453 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 TRAF1Q13077 416 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 MTMR1Q13613 665 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 VPS36Q86VN1 386 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 TAF1DQ9H5J8 278 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 SYNPO2Q9UMS6 1093 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 KIF13BQ9NQT8 1826 aa17.88■□□□□ 0.45
CCDC88B-210ENST00000494566 TESPA1A2RU30 521 aaPredicted RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms