RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 LRRC23Q53EV4 343 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 HERC4Q5GLZ8 1057 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 CCDC137Q6PK04 289 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 APBB1IPQ7Z5R6 666 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 CYP4X1Q8N118 509 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 LNX1Q8TBB1 728 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 SCFD1Q8WVM8 642 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 SLC7A6OSQ96CW6 309 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 ARHGEF26Q96DR7 871 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 MTMR9Q96QG7 549 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 CDC42EP4Q9H3Q1 356 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 SEC63Q9UGP8 760 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 PCDHA3Q9Y5H8 950 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 T-ENOLP0DO92 83 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 VCAM1P19320 739 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 PRKCIP41743 596 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 MARCKSL1P49006 195 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 NPEPPSP55786 919 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 MARSP56192 900 aaKnown RBP12.58□□□□□ -0.4
HDAC4-210ENST00000493582 PPATQ06203 517 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 SETDB1Q15047 1291 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 KHDC1Q4VXA5 237 aaKnown RBP12.58□□□□□ -0.4
HDAC4-210ENST00000493582 ZC2HC1CQ53FD0 456 aaPredicted RBP12.58□□□□□ -0.4
HDAC4-210ENST00000493582 KRT79Q5XKE5 535 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 AGGF1Q8N302 714 aaeCLIP12.58□□□□□ -0.4
HDAC4-210ENST00000493582 ENDOVQ8N8Q3 282 aaKnown RBP12.58□□□□□ -0.4
HDAC4-210ENST00000493582 SPOCK2Q92563 424 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 IFT43Q96FT9 208 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 LRRC37BQ96QE4 947 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.58□□□□□ -0.48e-6■■■□□ 14.7
HDAC4-210ENST00000493582 SCOCQ9UIL1 159 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 ASAP1Q9ULH1 1129 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 STX8Q9UNK0 236 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 CCDC88AQ3V6T2 1871 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 TAC1P20366 129 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 GRM4Q14833 912 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 PPP2R5EQ16537 467 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 KLHL23Q8NBE8 558 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 KRT35Q92764 455 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 ZNF333Q96JL9 665 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 KCTD10Q9H3F6 313 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 EMILIN3Q9NT22 766 aa12.58□□□□□ -0.4
HDAC4-210ENST00000493582 TCRBV7S2A1N4TA0A589 114 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CETN3O15182 167 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 PHF2O75151 1096 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 GNAQP50148 359 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 RRP1BQ14684 758 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 BICDL1Q6ZP65 573 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 SRRM1Q8IYB3 904 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 DYNLL2Q96FJ2 89 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 ROPN1BQ9BZX4 212 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 ROPN1Q9HAT0 212 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 KLRF2D3W0D1 207 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 ATP9AO75110 1047 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 USP17L8P0C7I0 530 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CHRNDQ07001 517 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 DNAJC3Q13217 504 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 IRGCQ6NXR0 463 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 RFWD3Q6PCD5 774 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 APLFQ8IW19 511 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CCDC105Q8IYK2 499 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 LRRC8CQ8TDW0 803 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 MAIP1Q8WWC4 291 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CTNNBL1Q8WYA6 563 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 RFFLQ8WZ73 363 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 DDX50Q9BQ39 737 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 SLCO1B3Q9NPD5 702 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CHORDC1Q9UHD1 332 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 COG5Q9UP83 839 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 TMEM110-MUSTN1A8MSY1 372 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 E9PMD0 336 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 BAG3O95817 575 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 POLGP54098 1239 aaPredicted RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CACNA2D1P54289 1103 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CCDC15Q0P6D6 951 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CTTNQ14247 550 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CCDC6Q16204 474 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 KYNUQ16719 465 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 TMEM266Q2M3C6 531 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 CMPK2Q5EBM0 449 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 SNX30Q5VWJ9 437 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 ZC3H18Q86VM9 953 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 SCG3Q8WXD2 468 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 MAGEB18Q96M61 343 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 NT5C3AQ9H0P0 336 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 THAP2Q9H0W7 228 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 C6orf50Q9HD87 102 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 SEPT11Q9NVA2 429 aaKnown RBP12.57□□□□□ -0.4
HDAC4-210ENST00000493582 TAS2R14Q9NYV8 317 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 UBR2Q8IWV8 1755 aa12.57□□□□□ -0.4
HDAC4-210ENST00000493582 PITPNM2Q9BZ72 1349 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 PODXLO00592 558 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 KCNA3P22001 575 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 CHRNA3P32297 505 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 SERPINB4P48594 390 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 CCDC152Q4G0S7 254 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 NRG4Q8WWG1 115 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 ART4Q93070 314 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 SERPINB12Q96P63 405 aa12.56□□□□□ -0.4
HDAC4-210ENST00000493582 MCM9Q9NXL9 1143 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms