RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 FAM105AQ9NUU6 356 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 RGL1Q9NZL6 768 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 PPME1Q9Y570 386 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 MEIS3P2A8K0S8 358 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 NT5C1B-RDH14C9J2C7 533 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 ZC3H11AO75152 810 aaKnown RBP eCLIP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 BAG4O95429 457 aaKnown RBP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 SKIP12755 728 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 YWHABP31946 246 aaKnown RBP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 RAB27AP51159 221 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 BCAR1P56945 870 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 KCNC3Q14003 757 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 CTTNQ14247 550 aaKnown RBP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 EMC2Q15006 297 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 HERC4Q5GLZ8 1057 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 LLGL2Q6P1M3 1020 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 SLFN12Q8IYM2 578 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 PSPC1Q8WXF1 523 aaKnown RBP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 INPP5FQ9Y2H2 1132 aa15.25■□□□□ 0.03
COL6A3-211ENST00000491233 ARIH1Q9Y4X5 557 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-211ENST00000491233 C5orf42Q9H799 3197 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 LOC730098B7Z3J9 87 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 JAK2O60674 1132 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 CA8P35219 290 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 TECP42680 631 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 SMC1AQ14683 1233 aaKnown RBP15.24■□□□□ 0.03
COL6A3-211ENST00000491233 XKR9Q5GH70 373 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 ANKRD54Q6NXT1 300 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 GLB1LQ6UWU2 654 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 TMEM184AQ6ZMB5 413 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 TMEM173Q86WV6 379 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-211ENST00000491233 PRPF31Q8WWY3 499 aaKnown RBP15.24■□□□□ 0.03
COL6A3-211ENST00000491233 RSPH1Q8WYR4 309 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 SUSD6Q92537 303 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 TMEM169Q96HH4 297 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 APOL5Q9BWW9 433 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 PHF7Q9BWX1 381 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-211ENST00000491233 ZSWIM4Q9H7M6 989 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 MINDY3Q9H8M7 445 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 TBC1D13Q9NVG8 400 aa15.24■□□□□ 0.03
COL6A3-211ENST00000491233 TDRD15B5MCY1 1934 aaKnown RBP15.23■□□□□ 0.03
COL6A3-211ENST00000491233 WNT7AO00755 349 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 ZBTB39O15060 712 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 GAS2O43903 313 aaKnown RBP15.23■□□□□ 0.03
COL6A3-211ENST00000491233 ZNF623O75123 536 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 SRGAP2CP0DJJ0 459 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 ALDH7A1P49419 539 aaKnown RBP15.23■□□□□ 0.03
COL6A3-211ENST00000491233 NEK4P51957 841 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 LAMTOR4Q0VGL1 99 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 ST3GAL1Q11201 340 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 CALCRLQ16602 461 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 NOMO2Q5JPE7 1267 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 SYCE2Q6PIF2 218 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 OTUD6AQ7L8S5 288 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 SRGAP1Q7Z6B7 1085 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 FERMT3Q86UX7 667 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 TPH2Q8IWU9 490 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 DIS3L2Q8IYB7 885 aaKnown RBP15.23■□□□□ 0.03
COL6A3-211ENST00000491233 EXOC8Q8IYI6 725 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 TCP11Q8WWU5 503 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 RPGRIP1Q96KN7 1286 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 MTRQ99707 1265 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 NRDE2Q9H7Z3 1164 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 PCDHB2Q9Y5E7 798 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 HCFC2Q9Y5Z7 792 aa15.23■□□□□ 0.03
COL6A3-211ENST00000491233 TECTAO75443 2155 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 C2orf71A6NGG8 1288 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 BTBD18B2RXH4 712 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 NEMFO60524 1076 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 OFD1O75665 1012 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 RNASELQ05823 741 aaKnown RBP15.22■□□□□ 0.03
COL6A3-211ENST00000491233 TRIM29Q14134 588 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 CBX2Q14781 532 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-211ENST00000491233 ERICH6BQ5W0A0 696 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 MRPL43Q8N983 215 aaKnown RBP15.22■□□□□ 0.03
COL6A3-211ENST00000491233 RNF149Q8NC42 400 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 BCL7CQ8WUZ0 217 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-211ENST00000491233 CASP10Q92851 521 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 PGBD4Q96DM1 585 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 EIF2AK1Q9BQI3 630 aaKnown RBP15.22■□□□□ 0.03
COL6A3-211ENST00000491233 GBP3Q9H0R5 595 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 ZBP1Q9H171 429 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 S1PR5Q9H228 398 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 XPNPEP1Q9NQW7 623 aa15.22■□□□□ 0.03
COL6A3-211ENST00000491233 DENND4AQ7Z401 1863 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-211ENST00000491233 B4GALT3O60512 393 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 CLASP2O75122 1294 aaKnown RBP15.21■□□□□ 0.03
COL6A3-211ENST00000491233 SLITRK3O94933 977 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 GALTP07902 379 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 SLC11A1P49279 550 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 UBXN11Q5T124 520 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 AGMOQ6ZNB7 445 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 VPS52Q8N1B4 723 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 URGCPQ8TCY9 931 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 AUTS2Q8WXX7 1259 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 IGSF21Q96ID5 467 aa15.21■□□□□ 0.03
COL6A3-211ENST00000491233 CCDC43Q96MW1 224 aaKnown RBP15.21■□□□□ 0.03
COL6A3-211ENST00000491233 TTC12Q9H892 705 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-211ENST00000491233 RSAD1Q9HA92 442 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms