RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 NOL10Q9BSC4 688 aaKnown RBP4.6□□□□□ -1.67
CPSF3-205ENST00000489629 ENKD1Q9H0I2 346 aa4.6□□□□□ -1.67
CPSF3-205ENST00000489629 IFT57Q9NWB7 429 aa4.6□□□□□ -1.67
CPSF3-205ENST00000489629 GPRC5BQ9NZH0 403 aa4.6□□□□□ -1.67
CPSF3-205ENST00000489629 SYNPO2Q9UMS6 1093 aa4.6□□□□□ -1.67
CPSF3-205ENST00000489629 MAFGO15525 162 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 GAS7O60861 476 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 FSBPO95073 299 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 APOL3O95236 402 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 ADH4P08319 380 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 GAAP10253 952 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 CD40P25942 277 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 INHBCP55103 352 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 CNGB1Q14028 1251 aaPredicted RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 SPIDRQ14159 915 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 PCBP1Q15365 356 aaKnown RBP eCLIP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 MAN2A1Q16706 1144 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 ZBTB41Q5SVQ8 909 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 GPR158Q5T848 1215 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 KRT40Q6A162 431 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 MFSD5Q6N075 450 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 PCSK4Q6UW60 755 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 C16orf86Q6ZW13 317 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 MYPNQ86TC9 1320 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 HOMER1Q86YM7 354 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 GSPT2Q8IYD1 628 aaKnown RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 ELOA2Q8IYF1 753 aaPredicted RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 ULK2Q8IYT8 1036 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 PIK3C3Q8NEB9 887 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 MDGA1Q8NFP4 955 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 CLIP3Q96DZ5 547 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 ZNF496Q96IT1 587 aaPredicted RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 HIST1H2AHQ96KK5 128 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 ZNF512Q96ME7 567 aaPredicted RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 CEP89Q96ST8 783 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 HIST1H2AJQ99878 128 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 GPR87Q9BY21 358 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 WDR33Q9C0J8 1336 aaKnown RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 THG1LQ9NWX6 298 aaKnown RBP4.59□□□□□ -1.67
CPSF3-205ENST00000489629 RCAN3Q9UKA8 241 aa4.59□□□□□ -1.67
CPSF3-205ENST00000489629 GRXCR1A8MXD5 290 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 STC2O76061 302 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 PFKMP08237 780 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 KRT4P19013 534 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 NEK4P51957 841 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 NAIF1Q69YI7 327 aaPredicted RBP4.58□□□□□ -1.68
CPSF3-205ENST00000489629 ZNF662Q6ZS27 426 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 UNC5BQ8IZJ1 945 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 SMC1BQ8NDV3 1235 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 APPBP2Q92624 585 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 UIMC1Q96RL1 719 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 MNTQ99583 582 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 FANCLQ9NW38 375 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 ING3Q9NXR8 418 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 USP36Q9P275 1121 aaKnown RBP4.58□□□□□ -1.68
CPSF3-205ENST00000489629 TRPS1Q9UHF7 1281 aa4.58□□□□□ -1.68
CPSF3-205ENST00000489629 MFAP3LO75121 409 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 SEC24DO94855 1032 aaPredicted RBP4.57□□□□□ -1.68
CPSF3-205ENST00000489629 PCDH8O95206 1070 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 NPEPPSP55786 919 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 PHC1P78364 1004 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 CD69Q07108 199 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 SEPT7Q16181 437 aaKnown RBP4.57□□□□□ -1.68
CPSF3-205ENST00000489629 RABL3Q5HYI8 236 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 CNNM4Q6P4Q7 775 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 ESPNLQ6ZVH7 1005 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 RHOUQ7L0Q8 258 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 PASD1Q8IV76 773 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 NIM1KQ8IY84 436 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 ATXN2LQ8WWM7 1075 aaKnown RBP4.57□□□□□ -1.68
CPSF3-205ENST00000489629 ARL8AQ96BM9 186 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 FDXACB1Q9BRP7 624 aaPredicted RBP4.57□□□□□ -1.68
CPSF3-205ENST00000489629 NCDNQ9UBB6 729 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 REXO2Q9Y3B8 237 aaKnown RBP4.57□□□□□ -1.68
CPSF3-205ENST00000489629 PCDHB6Q9Y5E3 794 aa4.57□□□□□ -1.68
CPSF3-205ENST00000489629 A0A087X1B8 175 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 LCHNA4D1U4 455 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 GOLGA6L6A8MZA4 724 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 ALDH1A2O94788 518 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 LY86O95711 162 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 CFBP00751 764 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 KPNA1P52294 538 aaPredicted RBP4.56□□□□□ -1.68
CPSF3-205ENST00000489629 SMN1Q16637 294 aaKnown RBP4.56□□□□□ -1.68
CPSF3-205ENST00000489629 DCAF17Q5H9S7 520 aaPredicted RBP4.56□□□□□ -1.68
CPSF3-205ENST00000489629 APBB1IPQ7Z5R6 666 aaPredicted RBP4.56□□□□□ -1.68
CPSF3-205ENST00000489629 MRGPREQ86SM8 312 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 DHX37Q8IY37 1157 aaKnown RBP4.56□□□□□ -1.68
CPSF3-205ENST00000489629 MB21D1Q8N884 522 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 CDYL2Q8N8U2 506 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 ZNF610Q8N9Z0 462 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 ST8SIA2Q92186 375 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 PRRX2Q99811 253 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 TARS2Q9BW92 718 aaKnown RBP4.56□□□□□ -1.68
CPSF3-205ENST00000489629 MS4A5Q9H3V2 200 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 SPTLC3Q9NUV7 552 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 C11orf21Q9P2W6 132 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 MSRAQ9UJ68 235 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 TMPRSS11EQ9UL52 423 aa4.56□□□□□ -1.68
CPSF3-205ENST00000489629 PRSS38A1L453 326 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms