RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 PODXLO00592 558 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 FOSP01100 380 aaPredicted RBP13.18□□□□□ -0.3
COL3A1-206ENST00000487010 HLA-DOAP06340 250 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 EZRP15311 586 aaKnown RBP13.18□□□□□ -0.3
COL3A1-206ENST00000487010 CTNNA2P26232 953 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 GBP1P32455 592 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 CIITAP33076 1130 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 COG2Q14746 738 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 SLFN13Q68D06 897 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 BTNL9Q6UXG8 535 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 PALB2Q86YC2 1186 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 RHOT2Q8IXI1 618 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 KCTD17Q8N5Z5 321 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 PRELID2Q8N945 189 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 MKL1Q969V6 931 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 CCDC17Q96LX7 622 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 AGPAT1Q99943 283 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 AMNQ9BXJ7 453 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 SEPT11Q9NVA2 429 aaKnown RBP13.18□□□□□ -0.3
COL3A1-206ENST00000487010 DMAC2Q9NW81 257 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 PARP2Q9UGN5 583 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 PCYOX1Q9UHG3 505 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 SUGT1Q9Y2Z0 365 aa13.18□□□□□ -0.3
COL3A1-206ENST00000487010 FAM170AA1A519 330 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 SMIM23A6NLE4 172 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 MIF4GDA9UHW6 222 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 C6orf229H3BNL8 230 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 BBOX1O75936 387 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 ATP6V1G2O95670 118 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 SLURP2P0DP57 97 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 EEF2P13639 858 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 CTTNQ14247 550 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 ARHGAP44Q17R89 818 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 TNFAIP8L3Q5GJ75 292 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 C11orf63Q6NUN7 778 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 C1orf186Q6ZWK4 172 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 UBL4BQ8N7F7 174 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 PIGOQ8TEQ8 1089 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 PRMT1Q99873 361 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 SAMD15Q9P1V8 674 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 MTRF1LQ9UGC7 380 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 FRMD4BQ9Y2L6 1034 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 PCDHA3Q9Y5H8 950 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 TAF1LQ8IZX4 1826 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 FOXN3O00409 490 aaPredicted RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 ALAS1P13196 640 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 MMP14P50281 582 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 SNAP25P60880 206 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 TCEAL1Q15170 157 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 PPP2R5AQ15172 486 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 PPP1R7Q15435 360 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 UBAP2Q5T6F2 1119 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 PHLDB3Q6NSJ2 640 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 HIBCHQ6NVY1 386 aaPredicted RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 TTC27Q6P3X3 843 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 KSR1Q8IVT5 923 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 KRT35Q92764 455 aa13.17□□□□□ -0.3
COL3A1-206ENST00000487010 N4BP2L2Q92802 583 aaPredicted RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 ELAC2Q9BQ52 826 aaKnown RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.17□□□□□ -0.3
COL3A1-206ENST00000487010 UBAP1LF5GYI3 381 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 PFASO15067 1338 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 RIPK2O43353 540 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 UBE4BO95155 1302 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 GGPS1O95749 300 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 TRIM49P0CI25 452 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 TRIM49CP0CI26 452 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CYP2J2P51589 502 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 MYL7Q01449 175 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 E2F5Q15329 346 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 QSER1Q2KHR3 1735 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CDC42EP5Q6NZY7 148 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 HS2ST1Q7LGA3 356 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 ZNF720Q7Z2F6 126 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 FBXO11Q86XK2 927 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 ZDHHC14Q8IZN3 488 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CERS5Q8N5B7 392 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CCDC63Q8NA47 563 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CYP2W1Q8TAV3 490 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 EPS8L3Q8TE67 593 aaKnown RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 FIZ1Q96SL8 496 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 HSD17B14Q9BPX1 270 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 ZSWIM1Q9BR11 485 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 MTFR1LQ9H019 292 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 STMN4Q9H169 189 aaPredicted RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 PARVGQ9HBI0 331 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 NOD2Q9HC29 1040 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 AGPAT3Q9NRZ7 376 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 DONSONQ9NYP3 566 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 NYAP2Q9P242 653 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 CTTNBP2NLQ9P2B4 639 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 KDM4FA0A1W2PPD8 638 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 FTLP02792 175 aaPredicted RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 VIMP08670 466 aaKnown RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 RARGP13631 454 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 IBSPP21815 317 aaPredicted RBP13.16□□□□□ -0.3
COL3A1-206ENST00000487010 FGFR4P22455 802 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 RFX1P22670 979 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 MARCKSL1P49006 195 aa13.16□□□□□ -0.3
COL3A1-206ENST00000487010 AUHQ13825 339 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms