RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 BTG3Q14201 252 aaPredicted RBP16.34■□□□□ 0.21
USP4-212ENST00000486549 RINT1Q6NUQ1 792 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 SP7Q8TDD2 431 aaPredicted RBP16.34■□□□□ 0.21
USP4-212ENST00000486549 KIFAP3Q92845 792 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 IFT74Q96LB3 600 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 CHST12Q9NRB3 414 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 AGPAT5Q9NUQ2 364 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 DACT1Q9NYF0 836 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 KIAA1671Q9BY89 1806 aa16.33■□□□□ 0.21
USP4-212ENST00000486549 RFXAPO00287 272 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 HIP1RO75146 1068 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 DGKIO75912 1065 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 YEATS4O95619 227 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 LIG1P18858 919 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 POU3F3P20264 500 aaPredicted RBP16.33■□□□□ 0.2
USP4-212ENST00000486549 TXLNAP40222 546 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 DNM1Q05193 864 aaKnown RBP16.33■□□□□ 0.2
USP4-212ENST00000486549 ECHDC2Q86YB7 292 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 ZBTB8OSQ8IWT0 167 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 CRIPAKQ8N1N5 446 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 FIBCD1Q8N539 461 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 KCTD17Q8N5Z5 321 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 SYT2Q8N9I0 419 aaPredicted RBP16.33■□□□□ 0.2
USP4-212ENST00000486549 DEPTORQ8TB45 409 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 LRRC15Q8TF66 581 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 TGS1Q96RS0 853 aaKnown RBP16.33■□□□□ 0.2
USP4-212ENST00000486549 C17orf80Q9BSJ5 609 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 KIFC3Q9BVG8 833 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 CCSER1Q9C0I3 900 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 RC3H2Q9HBD1 1191 aaKnown RBP16.33■□□□□ 0.2
USP4-212ENST00000486549 RNF216Q9NWF9 866 aaPredicted RBP16.33■□□□□ 0.2
USP4-212ENST00000486549 TMEM161AQ9NX61 479 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 CCDC39Q9UFE4 941 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 ZDHHC9Q9Y397 364 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 RALGAPA2Q2PPJ7 1873 aa16.33■□□□□ 0.2
USP4-212ENST00000486549 EPOPA6NHQ4 379 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 TBKBP1A7MCY6 615 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 TSPAN1O60635 241 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 FGFR1P11362 822 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 NCLP19338 710 aaKnown RBP16.32■□□□□ 0.2
USP4-212ENST00000486549 NAMPTP43490 491 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 SLC12A3P55017 1021 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 FAM189BP81408 668 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 CACNB1Q02641 598 aaPredicted RBP16.32■□□□□ 0.2
USP4-212ENST00000486549 POU5F1BQ06416 359 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 MCM6Q14566 821 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 PPP2R5AQ15172 486 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 LONRF3Q496Y0 759 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 C1orf186Q6ZWK4 172 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 GPBP1Q86WP2 473 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 IFNLR1Q8IU57 520 aaPredicted RBP16.32■□□□□ 0.2
USP4-212ENST00000486549 ATXN2LQ8WWM7 1075 aaKnown RBP16.32■□□□□ 0.2
USP4-212ENST00000486549 RAD54LQ92698 747 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 ZNF689Q96CS4 500 aaPredicted RBP16.32■□□□□ 0.2
USP4-212ENST00000486549 CPB2Q96IY4 423 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 NFKBIZQ9BYH8 718 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 BLOC1S4Q9NUP1 217 aa16.32■□□□□ 0.2
USP4-212ENST00000486549 MORC2Q9Y6X9 1032 aaPredicted RBP16.32■□□□□ 0.2
USP4-212ENST00000486549 NPHP3-ACAD11A0A0J9YXS1 232 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 A0A0U1RQF3 1178 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 CCDC169A6NNP5 214 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 B4GALT5O43286 388 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 PPP6R2O75170 966 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 PEX3P56589 373 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 ERVK-21P61565 698 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 NCBP1Q09161 790 aaKnown RBP16.31■□□□□ 0.2
USP4-212ENST00000486549 ADGRE1Q14246 886 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 CDCA2Q69YH5 1023 aaPredicted RBP16.31■□□□□ 0.2
USP4-212ENST00000486549 CMTR2Q8IYT2 770 aaKnown RBP16.31■□□□□ 0.2
USP4-212ENST00000486549 DAW1Q8N136 415 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 GDPD5Q8WTR4 605 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 LARP4BQ92615 738 aaKnown RBP16.31■□□□□ 0.2
USP4-212ENST00000486549 CHAMP1Q96JM3 812 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 DRC1Q96MC2 740 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 PANK2Q9BZ23 570 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 C2orf40Q9H1Z8 148 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 ELAC1Q9H777 363 aaKnown RBP16.31■□□□□ 0.2
USP4-212ENST00000486549 FAM105AQ9NUU6 356 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 LMCD1Q9NZU5 365 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 CFAP45Q9UL16 551 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 A0A0C4DFX4 3053 aa16.31■□□□□ 0.2
USP4-212ENST00000486549 SFI1A8K8P3 1242 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 KRT18P05783 430 aaKnown RBP16.3■□□□□ 0.2
USP4-212ENST00000486549 GUCY2CP25092 1073 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 HOXA11P31270 313 aaPredicted RBP16.3■□□□□ 0.2
USP4-212ENST00000486549 CTNNB1P35222 781 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 ME1P48163 572 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 MAPK7Q13164 816 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 DMP1Q13316 513 aaPredicted RBP16.3■□□□□ 0.2
USP4-212ENST00000486549 PCBP1Q15365 356 aaKnown RBP eCLIP16.3■□□□□ 0.2
USP4-212ENST00000486549 AMHR2Q16671 573 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 TMEM132AQ24JP5 1023 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 AAK1Q2M2I8 961 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 TJAP1Q5JTD0 557 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 RRAGBQ5VZM2 374 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 ATL3Q6DD88 541 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 NOTUMQ6P988 496 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 CDR2LQ86X02 465 aaPredicted RBP16.3■□□□□ 0.2
USP4-212ENST00000486549 ABI1Q8IZP0 508 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 FBXO22Q8NEZ5 403 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms