RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 HIBADHP31937 336 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 PIGOQ8TEQ8 1089 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 CRAMP1Q96RY5 1269 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 EYA3Q99504 573 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 IRAK4Q9NWZ3 460 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 TCRBV7S2A1N4TA0A589 114 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 POTEFA5A3E0 1075 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 O00370 1275 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 POTEIP0CG38 1075 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 CHRNA3P32297 505 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 SETDB1Q15047 1291 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 EDRF1Q3B7T1 1238 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 ARMC3Q5W041 872 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 POTEGQ6S5H5 508 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 POTEEQ6S8J3 1075 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 FRMD5Q7Z6J6 570 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 TEX9Q8N6V9 391 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 HAS1Q92839 578 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 RPS6KC1Q96S38 1066 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 SYT15Q9BQS2 421 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 IKZF4Q9H2S9 585 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 SIX2Q9NPC8 291 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 DLGAP2Q9P1A6 1054 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 COG5Q9UP83 839 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 PODXLO00592 558 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 IRF6O14896 467 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 VCAM1P19320 739 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 CALB2P22676 271 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 PABPC4Q13310 644 aaKnown RBP eCLIP20.19■□□□□ 0.822e-9■■□□□ 12.8
CCDC88B-207ENST00000479965 CTTNQ14247 550 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 MESDQ14696 234 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 DRAP1Q14919 205 aaPredicted RBP20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 BICDL1Q6ZP65 573 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 SFR1Q86XK3 245 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 CKAP2Q8WWK9 683 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 CELF1Q92879 486 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 MYLK2Q9H1R3 596 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 GPCPD1Q9NPB8 672 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 BCS1LQ9Y276 419 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 TMEM253P0C7T8 217 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 LMNB1P20700 586 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 RASA1P20936 1047 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 POLE2P56282 527 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 PPATQ06203 517 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 KNOP1Q1ED39 458 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 MUM1Q2TAK8 710 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 FOXR2Q6PJQ5 311 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 NT5C3AQ9H0P0 336 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 NKIRAS1Q9NYS0 192 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 INTUQ9ULD6 942 aa20.19■□□□□ 0.82
CCDC88B-207ENST00000479965 SLIT2O94813 1529 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 DRG2P55039 364 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 TRIP13Q15645 432 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 ZDHHC14Q8IZN3 488 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 RUNDC3BQ96NL0 473 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 BCAS3Q9H6U6 928 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 TXLNGQ9NUQ3 528 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 DIS3Q9Y2L1 958 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 VPS41P49754 854 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 KCNA1Q09470 495 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 SEL1L2Q5TEA6 688 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 UBL4BQ8N7F7 174 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 DNAJC12Q9UKB3 198 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 NTSR2O95665 410 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 KYNUQ16719 465 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 CGB2Q6NT52 195 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 PPP4R3CPQ6ZMV5 832 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 TTC8Q8TAM2 541 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 ASIC3Q9UHC3 531 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 C2CD2Q9Y426 696 aa20.18■□□□□ 0.82
CCDC88B-207ENST00000479965 ARAP2Q8WZ64 1704 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 ENTPD5O75356 428 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 NR3C1P04150 777 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 RFC4P35249 363 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 SOX5P35711 763 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 RFC5P40937 340 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 RPS6KA3P51812 740 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 JAM2P57087 298 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 RNF220Q5VTB9 566 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 ANKLE1Q8NAG6 615 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 STK32AQ8WU08 396 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 SLC35C1Q96A29 364 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 SYNGAP1Q96PV0 1343 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 ANKRD33BA6NCL7 494 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 SFI1A8K8P3 1242 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 PEX11AO75192 247 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 GCNT3O95395 438 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 GM2AP17900 193 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 EPHB2P29323 1055 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 CWF19L1Q69YN2 538 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 SUPT20HQ8NEM7 779 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 CEP95Q96GE4 821 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 MOV10L1Q9BXT6 1211 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 NENFQ9UMX5 172 aa20.17■□□□□ 0.82
CCDC88B-207ENST00000479965 LRP5O75197 1615 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 TPBGLP0DKB5 382 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 GNAZP19086 355 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 MRPS35P82673 323 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 KLC1Q07866 573 aa20.16■□□□□ 0.82
CCDC88B-207ENST00000479965 TSNAXIP1Q2TAA8 658 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms