RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 GALK1P51570 392 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 SCAND1P57086 179 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 LRRC32Q14392 662 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 SNX17Q15036 470 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 MILR1Q7Z6M3 343 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 PEX11GQ96HA9 241 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 ZDHHC5Q9C0B5 715 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 TNFRSF12AQ9NP84 129 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 LUC7LQ9NQ29 371 aaKnown RBP6.88□□□□□ -1.31
UPF3A-205ENST00000479712 MBNL3Q9NUK0 354 aaKnown RBP6.88□□□□□ -1.31
UPF3A-205ENST00000479712 GEMIN8Q9NWZ8 242 aaKnown RBP6.88□□□□□ -1.31
UPF3A-205ENST00000479712 ZNF180Q9UJW8 692 aa6.88□□□□□ -1.31
UPF3A-205ENST00000479712 ABT1Q9ULW3 272 aaKnown RBP6.88□□□□□ -1.31
UPF3A-205ENST00000479712 TCRBV5S2A0A599 114 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 SNUPNO95149 360 aaKnown RBP6.87□□□□□ -1.31
UPF3A-205ENST00000479712 CFBP00751 764 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 C4BPAP04003 597 aaKnown RBP6.87□□□□□ -1.31
UPF3A-205ENST00000479712 CYBBP04839 570 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 RNASE1P07998 156 aaKnown RBP6.87□□□□□ -1.31
UPF3A-205ENST00000479712 SDHAP31040 664 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 FNTBP49356 437 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 PGM2L1Q6PCE3 622 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 PAQR3Q6TCH7 311 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 FRMD7Q6ZUT3 714 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 PNMA8AQ86V59 439 aaPredicted RBP6.87□□□□□ -1.31
UPF3A-205ENST00000479712 CMIPQ8IY22 773 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 MYO1HQ8N1T3 1032 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 C1orf162Q8NEQ5 155 aaPredicted RBP6.87□□□□□ -1.31
UPF3A-205ENST00000479712 CLEC4DQ8WXI8 215 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 RELTQ969Z4 430 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 SHISA4Q96DD7 197 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 CAPNS2Q96L46 248 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 SLC13A1Q9BZW2 595 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 CTNND2Q9UQB3 1225 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 LUC7L2Q9Y383 392 aaKnown RBP6.87□□□□□ -1.31
UPF3A-205ENST00000479712 E9PCH4 1651 aa6.87□□□□□ -1.31
UPF3A-205ENST00000479712 ZC3H12DA2A288 527 aaKnown RBP6.86□□□□□ -1.31
UPF3A-205ENST00000479712 LCHNA4D1U4 455 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 GOLGA8AA7E2F4 631 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 GOLGA8BA8MQT2 603 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 FZD9O00144 591 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 FOXP2O15409 715 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 PRC1O43663 620 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 ABLIM3O94929 683 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 WNT11O96014 354 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 DPEP1P16444 411 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 ZSCAN20P17040 1043 aaPredicted RBP6.86□□□□□ -1.31
UPF3A-205ENST00000479712 TBX4P57082 545 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 GRIN1Q05586 938 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 PCBP2Q15366 365 aaKnown RBP eCLIP6.86□□□□□ -1.31
UPF3A-205ENST00000479712 EPHA7Q15375 998 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 CATSPEREQ5SY80 951 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 TOM1L2Q6ZVM7 507 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 AMOTL1Q8IY63 956 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 RTF1Q92541 710 aaKnown RBP6.86□□□□□ -1.31
UPF3A-205ENST00000479712 FAXDC2Q96IV6 333 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 MKS1Q9NXB0 559 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 GABBR1Q9UBS5 961 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 IP6K2Q9UHH9 426 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 DBR1Q9UK59 544 aaKnown RBP6.86□□□□□ -1.31
UPF3A-205ENST00000479712 LAMB4A4D0S4 1761 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 TIAM2Q8IVF5 1701 aa6.86□□□□□ -1.31
UPF3A-205ENST00000479712 GPRASP1Q5JY77 1395 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 F8W031 263 aaPredicted RBP6.85□□□□□ -1.31
UPF3A-205ENST00000479712 CT47B1P0C2W7 299 aaPredicted RBP6.85□□□□□ -1.31
UPF3A-205ENST00000479712 TMEM253P0C7T8 217 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 RBP3P10745 1247 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 ZNF792Q3KQV3 632 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 ARRDC4Q8NCT1 418 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 TTLL11Q8NHH1 800 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 LMBR1Q8WVP7 490 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 JPH3Q8WXH2 748 aaPredicted RBP6.85□□□□□ -1.31
UPF3A-205ENST00000479712 C16orf92Q96LL3 132 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 RHOBTB2Q9BYZ6 727 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 RNF32Q9H0A6 362 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 MSRAQ9UJ68 235 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 NOB1Q9ULX3 412 aaKnown RBP6.85□□□□□ -1.31
UPF3A-205ENST00000479712 MRFAP1Q9Y605 127 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 BRCA1P38398 1863 aaKnown RBP6.85□□□□□ -1.31
UPF3A-205ENST00000479712 ARFGEF1Q9Y6D6 1849 aa6.85□□□□□ -1.31
UPF3A-205ENST00000479712 USP54Q70EL1 1684 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 NUDT19A8MXV4 375 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 H2AFYO75367 372 aaKnown RBP6.84□□□□□ -1.31
UPF3A-205ENST00000479712 RFPL1O75677 317 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 RECQLP46063 649 aaPredicted RBP6.84□□□□□ -1.31
UPF3A-205ENST00000479712 GPR3P46089 330 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 ERVFRD-1P60508 538 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 KRT85P78386 507 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 ADCY1Q08828 1119 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 PDCD1Q15116 288 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 FAM102BQ5T8I3 360 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 NBPF11Q86T75 865 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 NME9Q86XW9 330 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 ABHD4Q8TB40 342 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 ERCC4Q92889 916 aaPredicted RBP6.84□□□□□ -1.31
UPF3A-205ENST00000479712 ACAP3Q96P50 834 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 RC3H2Q9HBD1 1191 aaKnown RBP6.84□□□□□ -1.31
UPF3A-205ENST00000479712 PCMTD2Q9NV79 361 aa6.84□□□□□ -1.31
UPF3A-205ENST00000479712 USP36Q9P275 1121 aaKnown RBP6.84□□□□□ -1.31
UPF3A-205ENST00000479712 ANKRD30BQ9BXX2 1392 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms