RNA–Protein interactions for RNA: ENST00000470083.5

LSM2-209, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM2, Length 641 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-209	ENST00000470083	DDX39A	O00148	427 aa	Known RBP	13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	HIP1	O00291	1037 aa		13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	MEIS1	O00470	390 aa		13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	GLUD1	P00367	558 aa		13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	CHST12	Q9NRB3	414 aa		13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	DNAJB4	Q9UDY4	337 aa		13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	ZFYVE26	Q68DK2	2539 aa		13.61	□□□□□ -0.23
LSM2-209	ENST00000470083	B4GALT3	O60512	393 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	RFPL2	O75678	378 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	DDAH1	O94760	285 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	UROD	P06132	367 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	SKI	P12755	728 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	FGFR4	P22455	802 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	GNAQ	P50148	359 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	GPC3	P51654	580 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	GPC5	P78333	572 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	PRKCQ	Q04759	706 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	SNW1	Q13573	536 aa	Known RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	COL9A3	Q14050	684 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	UBXN2B	Q14CS0	331 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	ACAP1	Q15027	740 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	MLF2	Q15773	248 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	EFCAB12	Q6NXP0	572 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	GET4	Q7L5D6	327 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	LRRC71	Q8N4P6	559 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	SRBD1	Q8N5C6	995 aa	Known RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	LPP	Q93052	612 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	ZNF668	Q96K58	619 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	SCLT1	Q96NL6	688 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	RPS6KC1	Q96S38	1066 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	GBP3	Q9H0R5	595 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	LY9	Q9HBG7	655 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	ANGPTL2	Q9UKU9	493 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	INPP5F	Q9Y2H2	1132 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	MTF2	Q9Y483	593 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	ZZEF1	O43149	2961 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	C2orf16	Q68DN1	1984 aa		13.6	□□□□□ -0.23
LSM2-209	ENST00000470083	FAM170B	A6NMN3	283 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	TEX28	O15482	410 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	OFD1	O75665	1012 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	PLEKHA8P1	O95397	391 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	SOD2	P04179	222 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	AK2	P54819	239 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	NIPA1	Q7RTP0	329 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	RALYL	Q86SE5	291 aa	Known RBP	13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	ZNF280B	Q86YH2	543 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	TEX2	Q8IWB9	1127 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	ZNF654	Q8IZM8	581 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	HDAC7	Q8WUI4	952 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	PHKB	Q93100	1093 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	MYL10	Q9BUA6	226 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	PIDD1	Q9HB75	910 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	PRMT8	Q9NR22	394 aa	Predicted RBP	13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	SSX2IP	Q9Y2D8	614 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	CNOT1	A5YKK6	2376 aa	Known RBP	13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	SPEG	Q15772	3267 aa		13.59	□□□□□ -0.23
LSM2-209	ENST00000470083	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	MEIS3P2	A8K0S8	358 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	C2CD2L	O14523	706 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	DHX15	O43143	795 aa	Known RBP	13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	LRP3	O75074	770 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	SHC2	P98077	582 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	SPEM2	Q0P670	501 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	LONRF3	Q496Y0	759 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	SLC44A4	Q53GD3	710 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	TWF2	Q6IBS0	349 aa	Known RBP	13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	IGDCC4	Q8TDY8	1250 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	NLRP7	Q8WX94	980 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	FGF14	Q92915	247 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	CLDN23	Q96B33	292 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	FAM167A	Q96KS9	214 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	TMEM175	Q9BSA9	504 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	RPP25	Q9BUL9	199 aa	Known RBP	13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	HERC2P3	Q9BVR0	1158 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	NT5C3A	Q9H0P0	336 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	PLEKHA4	Q9H4M7	779 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	LTB4R2	Q9NPC1	389 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	ZDHHC7	Q9NXF8	308 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	DOCK8	Q8NF50	2099 aa		13.58	□□□□□ -0.24
LSM2-209	ENST00000470083	ZNF623	O75123	536 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	CSDE1	O75534	798 aa	Known RBP	13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	C1R	P00736	705 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	FOS	P01100	380 aa	Predicted RBP	13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	CYP21A2	P08686	494 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	MYB	P10242	640 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	PML	P29590	882 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	RPS9	P46781	194 aa	Known RBP	13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	RAB27A	P51159	221 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	ANTXR2	P58335	489 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	ZBTB41	Q5SVQ8	909 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	LAIR1	Q6GTX8	287 aa		13.57	□□□□□ -0.24
LSM2-209	ENST00000470083	ZNF746	Q6NUN9	644 aa	Predicted RBP	13.57	□□□□□ -0.24

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