RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CEP170P1Q96L14 293 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 FAM81BQ96LP2 452 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 NOX5Q96PH1 765 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 SPAG5Q96R06 1193 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CRACR2AQ9BSW2 395 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 ASCC2Q9H1I8 757 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 MROH8Q9H579 483 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 DHX33Q9H6R0 707 aaKnown RBP8.3□□□□□ -1.08
COL6A3-208ENST00000468792 ATP6V0A4Q9HBG4 840 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 NLRC4Q9NPP4 1024 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CYP26B1Q9NR63 512 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 FAM53CQ9NYF3 392 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 HSPBP1Q9NZL4 362 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 GCNT4Q9P109 453 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 BTBD7Q9P203 1132 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 ARHGAP28Q9P2N2 729 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 APEX2Q9UBZ4 518 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 PCDHGC5Q9Y5F6 944 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 STYXL1Q9Y6J8 313 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 SCN4AP35499 1836 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 LCTP09848 1927 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 KIAA1217Q5T5P2 1943 aa8.3□□□□□ -1.08
COL6A3-208ENST00000468792 CCDC151A5D8V7 595 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 GLTPD2A6NH11 291 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 ADM5C9JUS6 153 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 GAS2O43903 313 aaKnown RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 CNMDO75829 334 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 PRKAR2AP13861 404 aaKnown RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 MCM3P25205 808 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 CNGA1P29973 690 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 EPHX2P34913 555 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 SOX5P35711 763 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 VAMP7P51809 220 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 PEX3P56589 373 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 CLDN10P78369 228 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 PRKCEQ02156 737 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 RAPGEF1Q13905 1077 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 PLS1Q14651 629 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 NAA30Q147X3 362 aaPredicted RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 TCEAL1Q15170 157 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 TARBP2Q15633 366 aaKnown RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 EPC2Q52LR7 807 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 TDRD12Q587J7 1177 aaKnown RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 FAM102BQ5T8I3 360 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 TCERG1LQ5VWI1 586 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 IQCEQ6IPM2 695 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 SWSAP1Q6NVH7 229 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 FBXO38Q6PIJ6 1188 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 METTL7BQ6UX53 244 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 CCDC60Q8IWA6 550 aaPredicted RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 FAM167AQ96KS9 214 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 IFT74Q96LB3 600 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 MFSD14AQ96MC6 490 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 CEP89Q96ST8 783 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 SYT11Q9BT88 431 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 KMT5AQ9NQR1 393 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 NRBP2Q9NSY0 501 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 PKD2L1Q9P0L9 805 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 DDX41Q9UJV9 622 aaKnown RBP8.29□□□□□ -1.08
COL6A3-208ENST00000468792 NAGPAQ9UK23 515 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 SNX12Q9UMY4 172 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 FZD1Q9UP38 647 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 FHOD1Q9Y613 1164 aa8.29□□□□□ -1.08
COL6A3-208ENST00000468792 A0A087X0T9 212 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 TARSL2A2RTX5 802 aaKnown RBP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 DENND3A2RUS2 1198 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 SOWAHBA6NEL2 793 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 F8VZ95 297 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ZC3H11AO75152 810 aaKnown RBP eCLIP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 LGR5O75473 907 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 FARP2O94887 1054 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ZRANB2O95218 330 aaKnown RBP eCLIP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 OATP04181 439 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 FAM228BP0C875 321 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ACTN1P12814 892 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 YBX3P16989 372 aaKnown RBP eCLIP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ADSSP30520 456 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ARL2P36404 184 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 NAMPTP43490 491 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 SLC26A2P50443 739 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 CYP2J2P51589 502 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 FKBP1BP68106 108 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 MYL7Q01449 175 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 SP2Q02086 613 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 PTK2Q05397 1052 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 GFPT1Q06210 699 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 KIF22Q14807 665 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 CBWD6Q4V339 395 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 CBWD3Q5JTY5 395 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 CBWD5Q5RIA9 395 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 C1orf220Q5T0J3 134 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 UTP14CQ5TAP6 766 aaKnown RBP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 FAM160B1Q5W0V3 765 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 GPAT2Q6NUI2 795 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 WDR93Q6P2C0 686 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 PLPPR4Q7Z2D5 763 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ZNF571Q7Z3V5 609 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ABRAQ8N0Z2 381 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 LRRN4CLQ8ND94 238 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 SLC30A5Q8TAD4 765 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms