RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TMEM134Q9H6X4 195 aa16.76■□□□□ 0.27
NPHP4-205ENST00000466897 KMT5AQ9NQR1 393 aa16.76■□□□□ 0.27
NPHP4-205ENST00000466897 PRDM5Q9NQX1 630 aaPredicted RBP16.76■□□□□ 0.27
NPHP4-205ENST00000466897 TNRC18O15417 2968 aaPredicted RBP16.76■□□□□ 0.27
NPHP4-205ENST00000466897 MICAL3Q7RTP6 2002 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 UMODL1Q5DID0 1318 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 ADGRA3Q8IWK6 1321 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 PPP1R37O75864 691 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 CTSHP09668 335 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 RAG1P15918 1043 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 FAM187BQ17R55 369 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 KMT5BQ4FZB7 885 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 MFSD5Q6N075 450 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 PPP4R3CPQ6ZMV5 832 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 RBM43Q6ZSC3 357 aaKnown RBP16.75■□□□□ 0.27
NPHP4-205ENST00000466897 TSHZ1Q6ZSZ6 1077 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 SMARCE1Q969G3 411 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 SYAP1Q96A49 352 aaPredicted RBP16.75■□□□□ 0.27
NPHP4-205ENST00000466897 PRIMPOLQ96LW4 560 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 SCLT1Q96NL6 688 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 STRA6Q9BX79 667 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 CCDC113Q9H0I3 377 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 ZHX3Q9H4I2 956 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 POLD4Q9HCU8 107 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 EXOC1Q9NV70 894 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 PCDHA5Q9Y5H7 936 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 TET1Q8NFU7 2136 aa16.75■□□□□ 0.27
NPHP4-205ENST00000466897 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.74■□□□□ 0.27
NPHP4-205ENST00000466897 CCDC169A6NNP5 214 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 CXCL10P02778 98 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 PFKMP08237 780 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 SFPQP23246 707 aaKnown RBP eCLIP16.74■□□□□ 0.27
NPHP4-205ENST00000466897 CYP2C18P33260 490 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 GTF2BQ00403 316 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 MBTD1Q05BQ5 628 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 MBTPS1Q14703 1052 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 FAM26FQ5R3K3 315 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 CCDC183Q5T5S1 534 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 STXBP4Q6ZWJ1 553 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 ZNF720Q7Z2F6 126 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 HAUS6Q7Z4H7 955 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 TMEM199Q8N511 208 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 TMEM40Q8WWA1 233 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 DPF3Q92784 378 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 PPP1R12CQ9BZL4 782 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 FZD8Q9H461 694 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 MRPL44Q9H9J2 332 aaKnown RBP16.74■□□□□ 0.27
NPHP4-205ENST00000466897 CDHR5Q9HBB8 845 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 KIAA1468Q9P260 1216 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 NR2E3Q9Y5X4 410 aa16.74■□□□□ 0.27
NPHP4-205ENST00000466897 UBE4BO95155 1302 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 K7ENM7 598 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 GPR182O15218 404 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 EIF3DO15371 548 aaKnown RBP eCLIP16.73■□□□□ 0.27
NPHP4-205ENST00000466897 SLC16A4O15374 487 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 ITGB8P26012 769 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 LPIN1Q14693 890 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 GPNMBQ14956 572 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 CAMK4Q16566 473 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 MAPK6Q16659 721 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 COBLL1Q53SF7 1204 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 TRIML1Q8N9V2 468 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 PPP1R16BQ96T49 567 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 PRMT7Q9NVM4 692 aaPredicted RBP16.73■□□□□ 0.27
NPHP4-205ENST00000466897 GINS2Q9Y248 185 aa16.73■□□□□ 0.27
NPHP4-205ENST00000466897 DENND3A2RUS2 1198 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 K7ERI5 159 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 NBNO60934 754 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 RPS6KA5O75582 802 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 AXLP30530 894 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 BMT2Q1RMZ1 405 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 PLEKHG4Q58EX7 1191 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 EPM2AIP1Q7L775 607 aaPredicted RBP16.72■□□□□ 0.27
NPHP4-205ENST00000466897 FAM228AQ86W67 206 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 APBB2Q92870 758 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 KIFC3Q9BVG8 833 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 MINDY3Q9H8M7 445 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 ERVK-5Q9HDB9 667 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 NOC2LQ9Y3T9 749 aaKnown RBP16.72■□□□□ 0.27
NPHP4-205ENST00000466897 PCDHB13Q9Y5F0 798 aa16.72■□□□□ 0.27
NPHP4-205ENST00000466897 CNTNAP2Q9UHC6 1331 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 INO80B-WBP1J3KQ70 363 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 ACKR2O00590 384 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 GHRP10912 638 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 NMT1P30419 496 aaKnown RBP16.71■□□□□ 0.27
NPHP4-205ENST00000466897 CCL23P55773 120 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 PAK2Q13177 524 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 AMHR2Q16671 573 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 ZNF658Q5TYW1 1059 aaPredicted RBP16.71■□□□□ 0.27
NPHP4-205ENST00000466897 TAS1R3Q7RTX0 852 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 MAP4K3Q8IVH8 894 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 KIAA0895Q8NCT3 520 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 SCLYQ96I15 445 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 ZNF668Q96K58 619 aaPredicted RBP16.71■□□□□ 0.27
NPHP4-205ENST00000466897 IFIH1Q9BYX4 1025 aaKnown RBP16.71■□□□□ 0.27
NPHP4-205ENST00000466897 AGO3Q9H9G7 860 aaKnown RBP16.71■□□□□ 0.27
NPHP4-205ENST00000466897 AGPAT5Q9NUQ2 364 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 TMEM63CQ9P1W3 806 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 MAN1B1Q9UKM7 699 aa16.71■□□□□ 0.27
NPHP4-205ENST00000466897 TBX20Q9UMR3 447 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms