RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NNTQ13423 1086 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 MTMR2Q13614 643 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 TTMPQ5BVD1 217 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 C1orf220Q5T0J3 134 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 ALS2CLQ60I27 953 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 CIAPIN1Q6FI81 312 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 HAUS6Q7Z4H7 955 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 ARHGEF19Q8IW93 802 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 PLEKHO2Q8TD55 490 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 SLC20A1Q8WUM9 679 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 ARHGEF26Q96DR7 871 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 HES6Q96HZ4 224 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 ACCSQ96QU6 501 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 KIAA1683Q9H0B3 1180 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 THAP2Q9H0W7 228 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 GOLGA8IPA6NC78 632 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 GOLGA8JA6NMD2 632 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 SART1O43290 800 aaKnown RBP9.7□□□□□ -0.86
SYNE1-217ENST00000466159 RPS6KA5O75582 802 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 CCNE2O96020 404 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 TMEM253P0C7T8 217 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 GHRHRQ02643 423 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 MYBPC2Q14324 1141 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 PLA2G4FQ68DD2 849 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 INTS8Q75QN2 995 aaKnown RBP9.7□□□□□ -0.86
SYNE1-217ENST00000466159 DDX42Q86XP3 938 aaKnown RBP eCLIP9.7□□□□□ -0.86
SYNE1-217ENST00000466159 SYCE1Q8N0S2 351 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 IQCKQ8N0W5 287 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 CTNNBL1Q8WYA6 563 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-217ENST00000466159 RFFLQ8WZ73 363 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 WNK4Q96J92 1243 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 RUFY1Q96T51 708 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 RMDN3Q96TC7 470 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 TBC1D22BQ9NU19 505 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 HSPBP1Q9NZL4 362 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 AMFRQ9UKV5 643 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 TESPA1A2RU30 521 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 GOLGA8KD6RF30 607 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 KRIT1O00522 736 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 OPA1O60313 960 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 MAPTP10636 758 aaKnown RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 VCAM1P19320 739 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 GTF2BQ00403 316 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 PPATQ06203 517 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 KIF22Q14807 665 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 NSMFQ6X4W1 530 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 RASGEF1CQ8N431 466 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 XXYLT1Q8NBI6 393 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 PIK3R5Q8WYR1 880 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 KAT5Q92993 513 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 VPS33BQ9H267 617 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 COG5Q9UP83 839 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 RIPK3Q9Y572 518 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 NCANO14594 1321 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 ZNF233A6NK53 670 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 LYPLA2O95372 231 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 CCDC172P0C7W6 258 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 ECHS1P30084 290 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 PPFIA1Q13136 1202 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 ALCAMQ13740 583 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 HLTFQ14527 1009 aaKnown RBP eCLIP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 DNAJC21Q5F1R6 531 aaKnown RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 XKR9Q5GH70 373 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 CFAP58Q5T655 872 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 FAM102BQ5T8I3 360 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 KCTD16Q68DU8 428 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 CALR3Q96L12 384 aaKnown RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 AGPAT1Q99943 283 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 PDCD2LQ9BRP1 358 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 KIFC3Q9BVG8 833 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 ISCUQ9H1K1 167 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 TAF1DQ9H5J8 278 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 RPAP3Q9H6T3 665 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 PXMP2Q9NR77 195 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 AMACRQ9UHK6 382 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 ADRB2P07550 413 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 PSMC5P62195 406 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 SKIDA1Q1XH10 827 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 EPC2Q52LR7 807 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 DCAF12L1Q5VU92 463 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 RNF207Q6ZRF8 634 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 SAMD7Q7Z3H4 446 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 C12orf56Q8IXR9 622 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 C4orf19Q8IY42 314 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 SH2D3CQ8N5H7 860 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 CWC15Q9P013 229 aaKnown RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 NR2E1Q9Y466 385 aa9.69□□□□□ -0.86
SYNE1-217ENST00000466159 CTDP1Q9Y5B0 961 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-217ENST00000466159 ANKRD62A6NC57 917 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CCDC169A6NNP5 214 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ANKRD63C9JTQ0 380 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 DDX3YO15523 660 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CTNND1O60716 968 aaKnown RBP9.68□□□□□ -0.86
SYNE1-217ENST00000466159 FGGP02679 453 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 IVLP07476 585 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ADSSP30520 456 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 USP8P40818 1118 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 SOX10P56693 466 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 CETN1Q12798 172 aa9.68□□□□□ -0.86
SYNE1-217ENST00000466159 ARHGEF16Q5VV41 709 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms