RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 FAM105AQ9NUU6 356 aa25.46■■□□□ 1.67
PTPN4-207ENST00000460162 TRIM29Q14134 588 aa25.45■■□□□ 1.66
PTPN4-207ENST00000460162 EMC2Q15006 297 aa25.45■■□□□ 1.66
PTPN4-207ENST00000460162 DIS3L2Q8IYB7 885 aaKnown RBP25.45■■□□□ 1.66
PTPN4-207ENST00000460162 ZNF579Q8NAF0 562 aaKnown RBP25.45■■□□□ 1.66
PTPN4-207ENST00000460162 VN1R2Q8NFZ6 395 aa25.45■■□□□ 1.66
PTPN4-207ENST00000460162 DYDC2Q96IM9 177 aa25.45■■□□□ 1.66
PTPN4-207ENST00000460162 RGL1Q9NZL6 768 aa25.45■■□□□ 1.66
PTPN4-207ENST00000460162 ARIH1Q9Y4X5 557 aaPredicted RBP25.45■■□□□ 1.66
PTPN4-207ENST00000460162 ZNF623O75123 536 aa25.44■■□□□ 1.66
PTPN4-207ENST00000460162 CYP4A11Q02928 519 aa25.44■■□□□ 1.66
PTPN4-207ENST00000460162 SRGAP1Q7Z6B7 1085 aa25.44■■□□□ 1.66
PTPN4-207ENST00000460162 USP15Q9Y4E8 981 aaPredicted RBP25.44■■□□□ 1.66
PTPN4-207ENST00000460162 NEMFO60524 1076 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 JAK2O60674 1132 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 ALDH7A1P49419 539 aaKnown RBP25.43■■□□□ 1.66
PTPN4-207ENST00000460162 KCNC3Q14003 757 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 CTTNQ14247 550 aaKnown RBP25.43■■□□□ 1.66
PTPN4-207ENST00000460162 CALCRLQ16602 461 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 XKR9Q5GH70 373 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 GLB1LQ6UWU2 654 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 TMEM184AQ6ZMB5 413 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 PRPF31Q8WWY3 499 aaKnown RBP25.43■■□□□ 1.66
PTPN4-207ENST00000460162 TMEM143Q96AN5 459 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 MTRQ99707 1265 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 PCDHA12Q9UN75 941 aa25.43■■□□□ 1.66
PTPN4-207ENST00000460162 BTBD18B2RXH4 712 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 LYPLA2O95372 231 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 PLA2G5P39877 138 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 BCAR1P56945 870 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 LAMTOR4Q0VGL1 99 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 SMC1AQ14683 1233 aaKnown RBP25.42■■□□□ 1.66
PTPN4-207ENST00000460162 TMC7Q7Z402 723 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 LPPQ93052 612 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 PGBD4Q96DM1 585 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 TMEM169Q96HH4 297 aa25.42■■□□□ 1.66
PTPN4-207ENST00000460162 EIF2AK1Q9BQI3 630 aaKnown RBP25.42■■□□□ 1.66
PTPN4-207ENST00000460162 BMP2KQ9NSY1 1161 aaPredicted RBP25.42■■□□□ 1.66
PTPN4-207ENST00000460162 HIDE1A8MVS5 230 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 ASAP2O43150 1006 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 ZC3H11AO75152 810 aaKnown RBP eCLIP25.41■■□□□ 1.66
PTPN4-207ENST00000460162 SLITRK3O94933 977 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 RBM10P98175 930 aaKnown RBP25.41■■□□□ 1.66
PTPN4-207ENST00000460162 ST3GAL1Q11201 340 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 FERMT3Q86UX7 667 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 TPH2Q8IWU9 490 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 TBC1D13Q9NVG8 400 aa25.41■■□□□ 1.66
PTPN4-207ENST00000460162 PCBP1Q15365 356 aaKnown RBP eCLIP25.4■■□□□ 1.66
PTPN4-207ENST00000460162 HERC4Q5GLZ8 1057 aaPredicted RBP25.4■■□□□ 1.66
PTPN4-207ENST00000460162 NOMO2Q5JPE7 1267 aa25.4■■□□□ 1.66
PTPN4-207ENST00000460162 RNF149Q8NC42 400 aa25.4■■□□□ 1.66
PTPN4-207ENST00000460162 SUSD6Q92537 303 aa25.4■■□□□ 1.66
PTPN4-207ENST00000460162 HSD17B14Q9BPX1 270 aa25.4■■□□□ 1.66
PTPN4-207ENST00000460162 TTC12Q9H892 705 aaPredicted RBP25.4■■□□□ 1.66
PTPN4-207ENST00000460162 MINDY3Q9H8M7 445 aa25.4■■□□□ 1.66
PTPN4-207ENST00000460162 PCDHB2Q9Y5E7 798 aa25.4■■□□□ 1.66
PTPN4-207ENST00000460162 CNTNAP2Q9UHC6 1331 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 SRGAP2CP0DJJ0 459 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 FOSBP53539 338 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 MXD4Q14582 209 aaPredicted RBP25.39■■□□□ 1.66
PTPN4-207ENST00000460162 BMS1Q14692 1282 aaKnown RBP25.39■■□□□ 1.66
PTPN4-207ENST00000460162 ANKRD54Q6NXT1 300 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 RNF135Q8IUD6 432 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 PHF7Q9BWX1 381 aaPredicted RBP25.39■■□□□ 1.66
PTPN4-207ENST00000460162 XPNPEP1Q9NQW7 623 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 MUTYHQ9UIF7 546 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 INPP5FQ9Y2H2 1132 aa25.39■■□□□ 1.66
PTPN4-207ENST00000460162 MEIS3P2A8K0S8 358 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 LOC730098B7Z3J9 87 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 WNT7AO00755 349 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 OFD1O75665 1012 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 ERLIN2O94905 339 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 SEC24BO95487 1268 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 TECP42680 631 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 RNASELQ05823 741 aaKnown RBP25.38■■□□□ 1.65
PTPN4-207ENST00000460162 CBX2Q14781 532 aaPredicted RBP25.38■■□□□ 1.65
PTPN4-207ENST00000460162 LONRF3Q496Y0 759 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 MRPL43Q8N983 215 aaKnown RBP25.38■■□□□ 1.65
PTPN4-207ENST00000460162 URGCPQ8TCY9 931 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 FAM122AQ96E09 287 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 CCDC43Q96MW1 224 aaKnown RBP25.38■■□□□ 1.65
PTPN4-207ENST00000460162 MTMR9Q96QG7 549 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 ANKEF1Q9NU02 776 aa25.38■■□□□ 1.65
PTPN4-207ENST00000460162 C2orf71A6NGG8 1288 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 NT5C1B-RDH14C9J2C7 533 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 ZBTB39O15060 712 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 DGAT1O75907 488 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 HOXB8P17481 243 aaPredicted RBP25.37■■□□□ 1.65
PTPN4-207ENST00000460162 TXKP42681 527 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 TFDP1Q14186 410 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 SAFBQ15424 915 aaKnown RBP eCLIP25.37■■□□□ 1.65
PTPN4-207ENST00000460162 MRPL10Q7Z7H8 261 aaKnown RBP25.37■■□□□ 1.65
PTPN4-207ENST00000460162 CASP10Q92851 521 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 ZBP1Q9H171 429 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 NRDE2Q9H7Z3 1164 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 LIMCH1Q9UPQ0 1083 aa25.37■■□□□ 1.65
PTPN4-207ENST00000460162 HOXA11P31270 313 aaPredicted RBP25.36■■□□□ 1.65
PTPN4-207ENST00000460162 UBXN11Q5T124 520 aa25.36■■□□□ 1.65
PTPN4-207ENST00000460162 LLGL2Q6P1M3 1020 aa25.36■■□□□ 1.65
PTPN4-207ENST00000460162 AGMOQ6ZNB7 445 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms