RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 HERC4Q5GLZ8 1057 aaPredicted RBP12.78□□□□□ -0.36
SCN9A-204ENST00000452182 FAM43BQ6ZT52 329 aaPredicted RBP12.78□□□□□ -0.36
SCN9A-204ENST00000452182 LRRC8DQ7L1W4 858 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 SRGAP1Q7Z6B7 1085 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 USP38Q8NB14 1042 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 NLRP4Q96MN2 994 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 INO80BQ9C086 356 aaPredicted RBP12.78□□□□□ -0.36
SCN9A-204ENST00000452182 C2orf40Q9H1Z8 148 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 KMT5AQ9NQR1 393 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 ARHGAP28Q9P2N2 729 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 PCDHA5Q9Y5H7 936 aa12.78□□□□□ -0.36
SCN9A-204ENST00000452182 A0A087WZ62 844 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 TRIM43BA6NCK2 446 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 EVI5O60447 810 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 TIMP1P01033 207 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 IQCF3P0C7M6 154 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 DARSP14868 501 aaKnown RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 EIF4BP23588 611 aaKnown RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 PHKA2P46019 1235 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 EFNA5P52803 228 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 CAMK4Q16566 473 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 KMT5BQ4FZB7 885 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 RBM43Q6ZSC3 357 aaKnown RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 SFR1Q86XK3 245 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 FAM178BQ8IXR5 827 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 TMEM161BQ8NDZ6 487 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 DEPTORQ8TB45 409 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 NLRP7Q8WX94 980 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 SMARCE1Q969G3 411 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 CCDC47Q96A33 483 aaKnown RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 SYAP1Q96A49 352 aaPredicted RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 TRIM43Q96BQ3 446 aaPredicted RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 OSMRQ99650 979 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 FDXACB1Q9BRP7 624 aaPredicted RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 GCOM2Q9BZD3 368 aaPredicted RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 GTPBP4Q9BZE4 634 aaKnown RBP12.77□□□□□ -0.36
SCN9A-204ENST00000452182 ZHX3Q9H4I2 956 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 RMND1Q9NWS8 449 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.36
SCN9A-204ENST00000452182 ADGRA3Q8IWK6 1321 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 LRRIQ4A6NIV6 560 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 CCDC169A6NNP5 214 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 CTSHP09668 335 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 RFC2P35250 354 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 GTF2BQ00403 316 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 ALCAMQ13740 583 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 FBXO47Q5MNV8 452 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 CCDC183Q5T5S1 534 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 ZNF720Q7Z2F6 126 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 HAUS6Q7Z4H7 955 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 ZBTB8OSQ8IWT0 167 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 SCLT1Q96NL6 688 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 STRA6Q9BX79 667 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 WNT8AQ9H1J5 351 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 TMEM134Q9H6X4 195 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 MRPL44Q9H9J2 332 aaKnown RBP12.77□□□□□ -0.37
SCN9A-204ENST00000452182 CDHR5Q9HBB8 845 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 PRDM5Q9NQX1 630 aaPredicted RBP12.77□□□□□ -0.37
SCN9A-204ENST00000452182 EXOC1Q9NV70 894 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 PRKAG2Q9UGJ0 569 aa12.77□□□□□ -0.37
SCN9A-204ENST00000452182 UMODL1Q5DID0 1318 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 SLC16A4O15374 487 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 PPP1R37O75864 691 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 RAG1P15918 1043 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 MBTD1Q05BQ5 628 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 MBTPS1Q14703 1052 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 FAM187BQ17R55 369 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 FAM26FQ5R3K3 315 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 MFSD5Q6N075 450 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 TSHZ1Q6ZSZ6 1077 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 C7orf61Q8IZ16 206 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 TRIML1Q8N9V2 468 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 TMEM40Q8WWA1 233 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 DPF3Q92784 378 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 HVCN1Q96D96 273 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 PRIMPOLQ96LW4 560 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 PPP1R16BQ96T49 567 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 PPP1R12CQ9BZL4 782 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 CCDC113Q9H0I3 377 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 FZD8Q9H461 694 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 TMEM63CQ9P1W3 806 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 GINS2Q9Y248 185 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 LTBP2Q14767 1821 aa12.76□□□□□ -0.37
SCN9A-204ENST00000452182 K7ENM7 598 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 K7ERI5 159 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 CXCL10P02778 98 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 SFPQP23246 707 aaKnown RBP eCLIP12.75□□□□□ -0.37
SCN9A-204ENST00000452182 ITGB8P26012 769 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 CYP2C18P33260 490 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 LPIN1Q14693 890 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 GPNMBQ14956 572 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 MAPK6Q16659 721 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 STXBP4Q6ZWJ1 553 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 EPM2AIP1Q7L775 607 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-204ENST00000452182 ERCC4Q92889 916 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-204ENST00000452182 ZNF668Q96K58 619 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-204ENST00000452182 KIFC3Q9BVG8 833 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 MINDY3Q9H8M7 445 aa12.75□□□□□ -0.37
SCN9A-204ENST00000452182 PRMT7Q9NVM4 692 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-204ENST00000452182 DENND3A2RUS2 1198 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms