RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 DEPTORQ8TB45 409 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 LRRC15Q8TF66 581 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 KIFAP3Q92845 792 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 CHAMP1Q96JM3 812 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 PANK2Q9BZ23 570 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 CHST12Q9NRB3 414 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 DACT1Q9NYF0 836 aa20.65■□□□□ 0.9
SHH-204ENST00000441114 FNDC1Q4ZHG4 1894 aaPredicted RBP20.64■□□□□ 0.9
SHH-204ENST00000441114 ADGRA3Q8IWK6 1321 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 NPHP3-ACAD11A0A0J9YXS1 232 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 SFI1A8K8P3 1242 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 PPP6R2O75170 966 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 FGFR1P11362 822 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 FAM189BP81408 668 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 CACNB1Q02641 598 aaPredicted RBP20.64■□□□□ 0.89
SHH-204ENST00000441114 MBTD1Q05BQ5 628 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 BTG3Q14201 252 aaPredicted RBP20.64■□□□□ 0.89
SHH-204ENST00000441114 LONRF3Q496Y0 759 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 ECHDC2Q86YB7 292 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 CRIPAKQ8N1N5 446 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 FIBCD1Q8N539 461 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 SP7Q8TDD2 431 aaPredicted RBP20.64■□□□□ 0.89
SHH-204ENST00000441114 RAD54LQ92698 747 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 CPB2Q96IY4 423 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 BLOC1S4Q9NUP1 217 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 AGPAT5Q9NUQ2 364 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 RNF216Q9NWF9 866 aaPredicted RBP20.64■□□□□ 0.89
SHH-204ENST00000441114 TMEM161AQ9NX61 479 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 CFAP45Q9UL16 551 aa20.64■□□□□ 0.89
SHH-204ENST00000441114 MORC2Q9Y6X9 1032 aaPredicted RBP20.64■□□□□ 0.89
SHH-204ENST00000441114 CCDC169A6NNP5 214 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 TSPAN1O60635 241 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 NAMPTP43490 491 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 PEX3P56589 373 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 NCBP1Q09161 790 aaKnown RBP20.63■□□□□ 0.89
SHH-204ENST00000441114 PPP2R5AQ15172 486 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 RRAGBQ5VZM2 374 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 GPBP1Q86WP2 473 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 IFNLR1Q8IU57 520 aaPredicted RBP20.63■□□□□ 0.89
SHH-204ENST00000441114 ZNF689Q96CS4 500 aaPredicted RBP20.63■□□□□ 0.89
SHH-204ENST00000441114 TGS1Q96RS0 853 aaKnown RBP20.63■□□□□ 0.89
SHH-204ENST00000441114 C17orf80Q9BSJ5 609 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 KIFC3Q9BVG8 833 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 MYO9BQ13459 2157 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 TCHHQ07283 1943 aa20.63■□□□□ 0.89
SHH-204ENST00000441114 A0A0U1RQF3 1178 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 EPOPA6NHQ4 379 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 TBKBP1A7MCY6 615 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 CUTAO60888 179 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 ME1P48163 572 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 TMEM132AQ24JP5 1023 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 ATL3Q6DD88 541 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 DAW1Q8N136 415 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 DRC1Q96MC2 740 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 GAS2L1Q99501 681 aaPredicted RBP20.62■□□□□ 0.89
SHH-204ENST00000441114 NFKBIZQ9BYH8 718 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 C2orf40Q9H1Z8 148 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 ELAC1Q9H777 363 aaKnown RBP20.62■□□□□ 0.89
SHH-204ENST00000441114 FAM105AQ9NUU6 356 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 KIAA1671Q9BY89 1806 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 SZT2Q5T011 3432 aa20.62■□□□□ 0.89
SHH-204ENST00000441114 COL4A6Q14031 1691 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 B4GALT5O43286 388 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 KRT18P05783 430 aaKnown RBP20.61■□□□□ 0.89
SHH-204ENST00000441114 FOSL2P15408 326 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 IGFBP4P22692 258 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 GUCY2CP25092 1073 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 HOXA11P31270 313 aaPredicted RBP20.61■□□□□ 0.89
SHH-204ENST00000441114 DDIT3P35638 169 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 ERVK-21P61565 698 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 MAPK7Q13164 816 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 ARSHQ5FYA8 562 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 CDR2LQ86X02 465 aaPredicted RBP20.61■□□□□ 0.89
SHH-204ENST00000441114 PDILTQ8N807 584 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 KCNG4Q8TDN1 519 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 LARP4BQ92615 738 aaKnown RBP20.61■□□□□ 0.89
SHH-204ENST00000441114 LPPQ93052 612 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 TIPINQ9BVW5 301 aa20.61■□□□□ 0.89
SHH-204ENST00000441114 RC3H2Q9HBD1 1191 aaKnown RBP20.61■□□□□ 0.89
SHH-204ENST00000441114 RALGAPA2Q2PPJ7 1873 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 ARF4P18085 180 aaPredicted RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 AXLP30530 894 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 DMP1Q13316 513 aaPredicted RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 AMHR2Q16671 573 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 SPOUT1Q5T280 376 aaKnown RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 CDCA2Q69YH5 1023 aaPredicted RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 NOTUMQ6P988 496 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 CMTR2Q8IYT2 770 aaKnown RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 KMT5AQ9NQR1 393 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 PRMT7Q9NVM4 692 aaPredicted RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 PCDHA7Q9UN72 937 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 USP20Q9Y2K6 914 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 PCDHB2Q9Y5E7 798 aa20.6■□□□□ 0.89
SHH-204ENST00000441114 MRPL42Q9Y6G3 142 aaKnown RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 COL4A4P53420 1690 aaPredicted RBP20.6■□□□□ 0.89
SHH-204ENST00000441114 A0A087X0B3 334 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 EOMESO95936 686 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 PRKCBP05771 671 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 SKIP12755 728 aa20.59■□□□□ 0.89
SHH-204ENST00000441114 ATF7P17544 494 aaPredicted RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms