RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 HMMRO75330 724 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SYF2O95926 243 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FESP07332 822 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 HARSP12081 509 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 HOXB3P14651 431 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PCMT1P22061 227 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 INPP5BP32019 993 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 LEPRP48357 1165 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ERVK-21P61565 698 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 CACNB2Q08289 660 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 NR5A1Q13285 461 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 CSRP2Q16527 193 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ANO4Q32M45 955 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ZRANB3Q5FWF4 1079 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM26DQ5JW98 314 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 KCTD18Q6PI47 426 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM124AQ86V42 546 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 LONP2Q86WA8 852 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM129CQ86XR2 697 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 MAPK15Q8TD08 544 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PIBF1Q8WXW3 757 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 RILPL2Q969X0 211 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PPP1R16BQ96T49 567 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 OMDQ99983 421 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 CIPCQ9C0C6 399 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 RPAP3Q9H6T3 665 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 DCP1AQ9NPI6 582 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC25A13Q9UJS0 675 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FBXO4Q9UKT5 387 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 A0A1W2PP64 1363 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PAPSS2O95340 614 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ATG7O95352 703 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ERCC1P07992 297 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 HOXC6P09630 235 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 AOC1P19801 751 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 MCCP23508 829 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 GRK6P43250 576 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 VASPP50552 380 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CCT8P50990 548 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 MLF1P58340 268 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TAF5Q15542 800 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TAF7Q15545 349 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PHKG1Q16816 387 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DUOXA1Q1HG43 343 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DEFB121Q5J5C9 76 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PHLDB3Q6NSJ2 640 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 UBE3BQ7Z3V4 1068 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CDAN1Q8IWY9 1227 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 OXR1Q8N573 874 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TTC13Q8NBP0 860 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SUSD6Q92537 303 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CCT8L2Q96SF2 557 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CORO1BQ9BR76 489 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 RIOK1Q9BRS2 568 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CYP4F11Q9HBI6 524 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 C6orf50Q9HD87 102 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF711Q9Y462 761 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PIAS3Q9Y6X2 628 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PRDM15P57071 1507 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TULP4Q9NRJ4 1543 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DNAJB5O75953 348 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DNTTP04053 509 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 WEE2P0C1S8 567 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 XBP1P17861 261 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TNNI3P19429 210 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SFPQP23246 707 aaKnown RBP eCLIP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 GRM5P41594 1212 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC6A11P48066 632 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 RGS3P49796 1198 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SP2Q02086 613 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SYCP1Q15431 976 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 STXBP2Q15833 593 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC35G1Q2M3R5 365 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 C4orf50Q6ZRC1 276 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DPH6Q7L8W6 267 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DEFB119Q8N690 84 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ATL2Q8NHH9 583 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC7A14Q8TBB6 771 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 E2F7Q96AV8 911 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 TBCBQ99426 244 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 BRMS1Q9HCU9 246 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 GDF3Q9NR23 364 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 HYPKQ9NX55 129 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 SCHIP1Q9P0W5 487 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CDH7Q9ULB5 785 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 NEU2Q9Y3R4 380 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 HBS1LQ9Y450 684 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 FHOD1Q9Y613 1164 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ERICH3Q5RHP9 1530 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 NRKQ7Z2Y5 1582 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 A0A1W2PQ45 241 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 A0A1W2PQY0 241 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 WDR64B1ANS9 1081 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 F5H6K3 240 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 DUSP11O75319 330 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 PMPCBO75439 489 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CLIC3O95833 236 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 ANXA6P08133 673 aa3.03□□□□□ -1.92
CCDC88A-205ENST00000426576 CCND3P30281 292 aaPredicted RBP3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms