RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 EXOC3L1Q86VI1 746 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 SPICE1Q8N0Z3 855 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 USP15Q9Y4E8 981 aaPredicted RBP22.95■■□□□ 1.26
USP48-205ENST00000421625 CREB1P16220 341 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 BRD2P25440 801 aaKnown RBP22.95■■□□□ 1.26
USP48-205ENST00000421625 PDE6CP51160 858 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 RHBDL3P58872 404 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 TNFAIP8L3Q5GJ75 292 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 CCHCR1Q8TD31 782 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 PCDHA3Q9Y5H8 950 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 ALG6Q9Y672 507 aa22.95■■□□□ 1.26
USP48-205ENST00000421625 TCP11X1B4DZS4 312 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 DIAPH2O60879 1101 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 KRT16P08779 473 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 RPL13P26373 211 aaKnown RBP22.94■■□□□ 1.26
USP48-205ENST00000421625 NFIXQ14938 502 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 KCTD1Q719H9 257 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 BZW1Q7L1Q6 419 aaKnown RBP22.94■■□□□ 1.26
USP48-205ENST00000421625 DYDC1Q8WWB3 177 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 BORCS6Q96GS4 357 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 MLXIPLQ9NP71 852 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 NOP53Q9NZM5 478 aaKnown RBP22.94■■□□□ 1.26
USP48-205ENST00000421625 PNMA3Q9UL41 463 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 SFI1A8K8P3 1242 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 TMEM110-MUSTN1A8MSY1 372 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 SPATA31C1P0DKV0 1188 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 POLD1P28340 1107 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 SPIRE1Q08AE8 756 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 GALNTL6Q49A17 601 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 CCDC25Q86WR0 208 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 SEPT12Q8IYM1 358 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 SYT2Q8N9I0 419 aaPredicted RBP22.94■■□□□ 1.26
USP48-205ENST00000421625 MXD3Q9BW11 206 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 STK33Q9BYT3 514 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 MTRF1LQ9UGC7 380 aaKnown RBP22.94■■□□□ 1.26
USP48-205ENST00000421625 DNM3Q9UQ16 869 aa22.94■■□□□ 1.26
USP48-205ENST00000421625 GTPBP10A4D1E9 387 aaKnown RBP22.93■■□□□ 1.26
USP48-205ENST00000421625 TGFB1I1O43294 461 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 LONRF1Q17RB8 773 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 NAIF1Q69YI7 327 aaPredicted RBP22.93■■□□□ 1.26
USP48-205ENST00000421625 TMEM109Q9BVC6 243 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 RUSC1Q9BVN2 902 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 CHORDC1Q9UHD1 332 aaPredicted RBP22.93■■□□□ 1.26
USP48-205ENST00000421625 PTPN22Q9Y2R2 807 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 CNTNAP4Q9C0A0 1308 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 FOXO6A8MYZ6 492 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 SETDB2Q96T68 719 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 TRIM33Q9UPN9 1127 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 STK38LQ9Y2H1 464 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 MYO3BQ8WXR4 1341 aa22.93■■□□□ 1.26
USP48-205ENST00000421625 TCRBV7S2A1N4TA0A589 114 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 RPS6KA4O75676 772 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 TNFAIP3P21580 790 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 CHRNA3P32297 505 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 CYP4A11Q02928 519 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 MKRN4PQ13434 485 aaPredicted RBP22.92■■□□□ 1.26
USP48-205ENST00000421625 ARHGAP44Q17R89 818 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 CCDC137Q6PK04 289 aaKnown RBP22.92■■□□□ 1.26
USP48-205ENST00000421625 BTNL9Q6UXG8 535 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 FAM186BQ8IYM0 893 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 TBC1D22AQ8WUA7 517 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 ARHGEF1Q92888 912 aaKnown RBP22.92■■□□□ 1.26
USP48-205ENST00000421625 NYXQ9GZU5 481 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.92■■□□□ 1.26
USP48-205ENST00000421625 ZBTB5O15062 677 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 CCNHP51946 323 aaPredicted RBP22.92■■□□□ 1.26
USP48-205ENST00000421625 BMT2Q1RMZ1 405 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 KLHL29Q96CT2 875 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 DDX23Q9BUQ8 820 aaKnown RBP22.92■■□□□ 1.26
USP48-205ENST00000421625 USP40Q9NVE5 1235 aa22.92■■□□□ 1.26
USP48-205ENST00000421625 HGSO14964 777 aaPredicted RBP22.91■■□□□ 1.26
USP48-205ENST00000421625 CBWD6Q4V339 395 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 PRR16Q569H4 304 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 CBWD3Q5JTY5 395 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 CBWD5Q5RIA9 395 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 LRCH2Q5VUJ6 765 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 TAOK1Q7L7X3 1001 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 ZNF804AQ7Z570 1209 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 ERICH1Q86X53 443 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 ANO3Q9BYT9 981 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 PCYOX1Q9UHG3 505 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 COPS2P61201 443 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 BNIP1Q12981 228 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 PICALMQ13492 652 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 COG2Q14746 738 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 KSR1Q8IVT5 923 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 STMN4Q9H169 189 aaPredicted RBP22.91■■□□□ 1.26
USP48-205ENST00000421625 BHMT2Q9H2M3 363 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 NARFQ9UHQ1 456 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 SYNGAP1Q96PV0 1343 aa22.91■■□□□ 1.26
USP48-205ENST00000421625 COL5A3P25940 1745 aaPredicted RBP22.91■■□□□ 1.26
USP48-205ENST00000421625 ANKRD62A6NC57 917 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 LRRN2O75325 713 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 RARGP13631 454 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 CTNNA2P26232 953 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 FMO5P49326 533 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 NUGGCQ68CJ6 796 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 PFASO15067 1338 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 ZMYM2Q9UBW7 1377 aa22.9■■□□□ 1.26
USP48-205ENST00000421625 TMEM120BA0PK00 339 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms